Clone FMO08231 Report

Search the DGRC for FMO08231

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:82
Well:31
Vector:pMK33-CFH-BD
Associated Gene/TranscriptsisA-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO08231.5prime Sequence

593 bp (593 high quality bases) assembled on 2010-03-11

> FMO08231.5prime
CAGTCGACATGGAACGGAGTCATCTTTACTTGCCCACTCTGAGCTACGCG
GCCATGGGTCACGTATACGCACCGTATCGCGGAAGCAGTTCACCCGCACT
ATCGACAGCATCGTCAACATCATCGAAGCCGGAGCAGATCGAGGAGCTGG
TGTCCCAGCAGCTGCATCATCTCAAAATGCACTACGCCGACGAGGAGCAA
CGCTACGTAGACCAGATGCTCCTGGAGAATCCCATTGTTGTGGAGCGCCG
TGCACCGCCGCCGCTGAAAACGGAGCTTGCTATGGATTGCCGCGGATCGG
GTTCCGGATCAGGTTCCGGTTCTGGTTCGGATGTCAAGGATGCCCAGCGT
CAGAGGGCCGAGTCGTGCCGCAAATCCCGCTACAACAACAAGATCAAGAA
GGCCAAGCTGCGCTTCCGGCACAAATTCGTCAGCGGGCAGCTGAAGAAGA
GCGCCGTCATGTTGGACACGATGCGGGATGTGATTGCCCAGGCGGAGAGG
CAGCTGCTCGAGCGGGGATATCCCGCCGCCACACTCGAGCGGATGCGGGC
CACTTTCGGCCTGGAAATGGAGCAGGCAAGCTTTCTAGACCAT

FMO08231.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:39:22
Subject Length Description Subject Range Query Range Score Percent Strand
sisA-RA 779 CG1641-RA 67..634 8..575 2840 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:39:21
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11321724..11322291 575..8 2840 100 Minus
Blast to na_te.dros performed on 2014-11-28 19:39:21 has no hits.

FMO08231.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:40:35 Download gff for FMO08231.5prime
Subject Subject Range Query Range Percent Splice Strand
sisA-RA 49..623 1..575 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:36:31 Download gff for FMO08231.5prime
Subject Subject Range Query Range Percent Splice Strand
sisA-RA 60..634 1..575 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:22:49 Download gff for FMO08231.5prime
Subject Subject Range Query Range Percent Splice Strand
sisA-RA 60..634 1..575 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:22:49 Download gff for FMO08231.5prime
Subject Subject Range Query Range Percent Splice Strand
X 11321724..11322294 1..575 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:36:31 Download gff for FMO08231.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11215757..11216327 1..575 99   Minus