FMO08232.5prime Sequence
1081 bp (956 high quality bases) assembled on 2010-03-11
> FMO08232.5prime
CAGTCGATATGAAGCGGCGCTGGTCGAACAACGGCGGCTTCATGCGCCTA
CCGGAGGAGTCGTCCTCGGAGGTCACGTCCTCCTCGAACGGGCTCGTCCT
GCCCTCGGGGGTGAACATGTCGCCCTCGTCGCTGGACTCGCACGACTATT
GCGATCAGGACCTTTGGCTCTGCGGCAACGAGTCCGGTTCGTTTGGCGGC
TCCAACGGCCATGGCCTAAGTCAGCAGCAGCAGAGCGTCATCACGCTGGC
CATGCACGGGTGCTCCAGCACTCTGCCCGCGCAGACAACCATCATTCCGA
TCAACGGCAACGCGAATGGGAATGGAGGCTCCACCAATGGCCAATATGTG
CCGGGTGCCACTAATCTGGGAGCGTTGGCCAACGGGATGCTCAATGGGGG
CTTCAATGGAATGCAGCAACAGATTCAGAATGGCCACGGCCTCATCAACT
CCACAACGCCCTCAACGCCGACCACCCCGCTCCACCTTCAGCAGAACCTG
GGGGGCGCGGGCGGCGGCGGTATCGGGGGAATGGGTATTCTTCACCACGC
GAATGGCACCCCAAATGGCCTTATCGGAGTTGTGGGAGGCGGCGGCGGAG
TAGGTCTTGGAGTAGGCGGAGGCGGAGTGGGAGGCCTGGGAATGCAGCAC
ACACCCCGAAGCGATTCGGTGAATTCTATATCTTCAGGTCGCGATGATCT
CTCGCCTTCGAGCAGCTTGAACGGATACTCGGCGAACGAAAGCTGCGATG
CGAAGAAGAGCAAGAAGGACCTGCGCCACGGGTGCAAGAGGAGCTGTGCC
TGGTTTGCGGCGACAGGGCCTCCGGCTACCACTACAACGCCCTCACCTGT
GAGGGCTGCAAGGGGTTCTTTCGACGCAGCGTTACGAAGAGCGCCGTCTA
CTGCTGCAAGTCGGCGCCGCCTGCAAATGACATGTACATGAGGCGAAAGT
GGTCAGGATGCCGCCTGAAAATGCCTGGCGTGGGTATGCGCCGAATGCGT
CGTCCCGGAGAACAATGTGCGATGAACGCGCGAAGAAGGCGAGGAGACAT
GACACTTCCCCGGCTTCACATGCGCAATGGA
FMO08232.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:02:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
EcR-RG | 8415 | CG1765-RG | 1064..2091 | 9..1026 | 4810 | 98.6 | Plus |
EcR-RB | 4092 | CG1765-RB | 1145..2172 | 9..1026 | 4810 | 98.6 | Plus |
EcR-RE | 5233 | CG1765-RE | 1104..1455 | 685..1026 | 1430 | 96 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:02:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 6122880..6123560 | 689..9 | 3405 | 100 | Minus |
2R | 25286936 | 2R | 6094723..6095074 | 1026..685 | 1185 | 93.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:02:45 has no hits.
FMO08232.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:40:36 Download gff for
FMO08232.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
EcR-RB | 1136..2182 | 1..1038 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:41:20 Download gff for
FMO08232.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
EcR-RB | 1139..2185 | 1..1038 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:52:41 Download gff for
FMO08232.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
EcR-RB | 1139..2185 | 1..1038 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:52:41 Download gff for
FMO08232.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6094710..6095071 | 688..1038 | 95 | <- | Minus |
2R | 6122882..6123566 | 1..687 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:41:20 Download gff for
FMO08232.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 1982215..1982576 | 688..1038 | 95 | <- | Minus |
arm_2R | 2010387..2011071 | 1..687 | 99 | | Minus |