FMO08233.5prime Sequence
1094 bp (987 high quality bases) assembled on 2010-03-11
> FMO08233.5prime
CAGTCGACATGACAGAGAATCAGCTGTATCCCATGTCATCGGAGTTCTTT
GACACCGGCTCGAACAGCAGCAGCAACACACTTAAATACGATCTGTATTC
CCTGGGCTCCACCGTTGTGGGGGCGGCGCTGCCCACGTTGACGATCAACA
CGGGCTACGGCAGCAGCAGCAGCAACAATAACAACACTAATAACAACAAT
AACAACAGCAGTAGTCACAGCAGCAGCAGCAACTGCTCCACCAGCACCAC
AAATACCTGTAATGTAATGCTAAGTACAACGGCCATAACAATACCACGCA
GCAGCAACCACAACCAGATCCATCATCATCCGTATCAGCAGTCCGATTTG
CAGACACCGCGCCATCATCCCAGTCCTCTACACACGTTGCCCAGCATGAC
CCATCAGCAAAATCAGCTTCAGCAGCAGCAGCAGCAGCAACACCACAACC
AACAGCAGCAGCTGCAGCAATCGCATTTGGCACTGGGAGAGCTTTCAGAC
TTTGGACTAGATGCACTGGATGCCGCTTCGCTATCGCCCACTCTGCTGCA
GGATGTGAGCCTGAGTGCTGTTTCTCCTCTAAGCACCACACTCTACAATG
GCAACACCAGTGGAGCAGGCAGCAGCAACGGAATAGGATCCGGCAGTGGT
GGCTACTTCACGCCCGACATGTCGCACAGCCTCAGCCTGAATGTGGTCAG
TGAGCAGGTTCTGCTGCAGGAAGCCACAACCCCGAATGAGTTGCTCTACG
AGATGACACCCAACTCGAATGCCATGTGGAGTGATATCAGCAGTGCCATT
ATCCATACCAAACACGAGCCATTCAGTCTGGACGATGACTATATCTTTCC
CACGATAAGCCGAAATACAGGCAGCCGATTTGTCTGACCTTATGCGCGAT
TTTCTGGATGTGATCGGAAATATAGAGGATTTCTTGCCGCAGACCGCAGT
CACTCAAGTGTCAATTTCCTACTGTCGCCGCAAGCTCAAGGAAAAGGATG
CCCTGGTGCACCGCCCATGAAACTTTTGCAAACAGCAACAAAGGATACCC
AGCCGCTGCAGGTCGGCAGCCTGCTGCAAGTGCCAAAGCTGTCT
FMO08233.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:11:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13624-RG | 3698 | CG13624-RG | 776..1864 | 9..1091 | 5040 | 98.1 | Plus |
| CG13624-RF | 3805 | CG13624-RF | 433..1521 | 9..1091 | 5040 | 98.1 | Plus |
| CG13624-RE | 3680 | CG13624-RE | 308..1396 | 9..1091 | 5040 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:11:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24561754..24562842 | 1091..9 | 4815 | 97.8 | Minus |
Blast to na_te.dros performed 2014-11-28 20:11:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2335..2671 | 144..475 | 377 | 60.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..7186 | 148..624 | 351 | 56.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6773..7086 | 161..469 | 334 | 60 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2319..2641 | 161..469 | 330 | 60.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6714..7004 | 180..462 | 255 | 57.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2543 | 182..446 | 236 | 60.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6714..6952 | 201..437 | 234 | 58.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1049..1160 | 210..320 | 152 | 63.2 | Plus |
FMO08233.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:40:37 Download gff for
FMO08233.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13624-RA | 429..1517 | 9..1091 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:30:03 Download gff for
FMO08233.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13624-RC | 1306..2394 | 9..1091 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:52:17 Download gff for
FMO08233.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13624-RE | 308..1396 | 9..1091 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:52:17 Download gff for
FMO08233.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24561754..24562842 | 9..1091 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:30:03 Download gff for
FMO08233.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20387476..20388564 | 9..1091 | 98 | | Minus |
