FMO08235.5prime Sequence
1063 bp (945 high quality bases) assembled on 2010-03-11
> FMO08235.5prime
CAGTCGACATGGACTTCCAGAGCGCCATGGAAACCTTTGCCGAAGCCTGG
GTGGCAGCCAATGCCGGTCAGCAGAGTCAGGCCTTGGCCTTAACCAGAGC
TGTCAACGCGGCCGCCGTTGTGGCCTCGGCCAATGCCAAATCCCCCAATG
CCTCCTCCTCCGCCTCGGCCAGCCTGGCGGATCTGGCCGTCAAGAAGGAG
CACTCCATCTCGCCGCCCCACAGTGTGGTGAGCGTGGGTGTGGGCGTGGC
TGGCGAGGATCAGCATCGCAGATCCTCGTTGCAGGGTGTGCAGGAGAAGC
TCACCCAGCTGCAGATGCAGCAGCAGCATCACCAGCAGCAGCAGCAACAG
CAGCAGCAGCAACAGCAACAGCACCAGCAGCAGCAGCAACATCATCATCA
TCAGCAGCAAGCACAGCAGGCAGGCGCTGGAGTGGGTAGTGGCGAGCTGG
CTGGACGCAGATCCTCCGAGGGCACACCACCCACCGCCCATCCCCCAACG
AACTCCGAGGGACAGGCGCTCTCCTCCTCCACAGCCTCATCTAGTCAGAA
TGCCACCCCCAAGAGCGATCGGGAAAGGGAGCGTGAGCGGGAGAGGGATC
GGGAGGAGCGCGTGGAGCGGGGCAGCATATCCTGCCTCCCACCAGCCGCC
CTTGGAATGGCCGTGGGCGTCCAGCAGGCCCAGCATCAGGAGAAGCTGCT
CAGCCATCCGGCCTTGGATTCGCGACGGGAGTTCGACGTCAGCAAAGTGA
ATCCCAAATCACTTCCACTTCACTGTGTGGTGGAGTCGGTGCACTCACTG
CACGCCTCCCTGACATCGACACTCGCCAGCCCTGGAAGAGGCGGCCCATA
TCGAGACCGACAGCTACGTGATCATCGCCGCGGCCACGCCTGAGCGAGAT
TGTCAGACGCGCTCCAGAGCTCGCTACTCCAGAGGTGGCAACAAGCCAGA
GCTCATAATAATCAACATGAACCCTACCCTGAGCGAATATCGACAATCAC
CGGGCCGGTCACGAATTGTGGTGATGACTCTGATACCCGCTGAGATTGGA
TCCCGCCCCAGAC
FMO08235.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:11:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dve-RA | 4903 | CG5799-RA | 716..1690 | 5..965 | 4510 | 98.5 | Plus |
| dve-RB | 3469 | CG5799-RB | 31..256 | 754..965 | 780 | 93.8 | Plus |
| CG45093-RD | 5320 | CG45093-RD | 1677..1746 | 331..400 | 185 | 84.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:11:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22262762..22263443 | 72..753 | 3410 | 100 | Plus |
| 2R | 25286936 | 2R | 22280667..22280805 | 754..890 | 595 | 98.6 | Plus |
| 2R | 25286936 | 2R | 22244678..22244747 | 5..74 | 335 | 98.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:11:53 has no hits.
FMO08235.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:40:26 Download gff for
FMO08235.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dve-RA | 713..1694 | 1..968 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:30:01 Download gff for
FMO08235.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dve-RA | 713..1694 | 1..968 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:52:14 Download gff for
FMO08235.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dve-RA | 713..1694 | 1..968 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:52:14 Download gff for
FMO08235.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22244675..22244747 | 1..74 | 97 | -> | Plus |
| 2R | 22262765..22263443 | 75..753 | 100 | -> | Plus |
| 2R | 22280667..22280805 | 754..890 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:30:01 Download gff for
FMO08235.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18132180..18132252 | 1..74 | 97 | -> | Plus |
| arm_2R | 18150270..18150948 | 75..753 | 100 | -> | Plus |
| arm_2R | 18168172..18168310 | 754..890 | 98 | == | Plus |
