FMO08236.5prime Sequence
1060 bp (929 high quality bases) assembled on 2010-03-11
> FMO08236.5prime
CAGTCGACATGATAAAGTCCACCACGAATCCACAGGAACAGCGTCTGCCA
CGCCCCGAGGATCAGTCGCCAGCGCCGCCGCCGCCGCCCCCCTCCTCAGC
CACCACCTCCACCGCCGCCCCAGCCACGCCCACGCACCAAGTGGCCACCG
TGATAGCCAACATGGACACCCTGAAGACAGCCTTTCTGCCCAATCTCAGC
ATGGACCCCAATGTGCACGTGTCGCCGCACTATTGTCCCATGTGTCACCA
GCAGTTTGAGCGACCGCAGCACGTCGCGGATCACATGCAGCTGTGCCACG
GGATCACGCTGAACGCCCAGGGAGCCATTGCCACGCTGGACGGCGGTCAT
CCGCAGGCACAGCAGCACCCCAAGCTCAGCCACCCCTGCTTCAATTGTGA
TGAAAAGTTTGGCAACGCCGTCGATTTAGACGAACACCATCGGCTGGCCC
ATCAGACGCCCGCCTTCCTGTCCCGCTGCCTTATGTGCAGCATCTATGGC
ATCCACTCGGCCACCCAGCAGCCCAACGAGTACAAATGCACGCAGTGCGG
CTCCATTTGCACCACCGCCATGCTGGCTGCCGGACAGCAGGGCTTTATGG
AACAGCAGGAGGCGGCGGTGACGCCCGACGATCAGCTGCCGGCAATGGCG
CCCCGTGATATGAGACTGACGCCCGAGGAGCAGCACCATCAGCAGCAACT
GCAGGCGGAGCACCACCATCAGCAACAGCACCAACAACAACAACAGCAGC
AGCAGCAGCAGCAGGAACTGCTGGAGCAGCAGCAGCGTGAAATGCAGAGC
AGGCGCAACAGCAGCAGTGCACCATCACCAGCAGGATCAGGATCTCGCCG
CCGACCAGGTTGCGCTGAAGTGCCACCACTCACCGTCAGCTAAACAAGAA
CGCCAACGGTGGCGCATTGTGTCCCATCCGCAGTCATTATCAAGGAGGGC
CACTCAGCCTGACCGACTGGGTGATGTTGTCACTCTGTGCCTGTCTATGC
CATACCAGCCAATCCCGGTGTACCCGCTTCGGCAGTCGGGGGTGCTTAGT
CCGCCACAAC
FMO08236.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:19:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cf2-RE | 4231 | CG11924-RE | 653..1714 | 9..1059 | 4855 | 97.9 | Plus |
| Cf2-RA | 3763 | CG11924-RA | 320..1381 | 9..1059 | 4855 | 97.9 | Plus |
| Cf2-RB | 3679 | CG11924-RB | 320..1381 | 9..1059 | 4855 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:19:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4881359..4882392 | 1033..9 | 4615 | 98.5 | Minus |
| X | 23542271 | X | 13649941..13650019 | 679..757 | 185 | 82.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:19:21 has no hits.
FMO08236.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:40:27 Download gff for
FMO08236.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cf2-RA | 319..1378 | 1..1051 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:58:40 Download gff for
FMO08236.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cf2-RB | 313..1372 | 1..1051 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:55:53 Download gff for
FMO08236.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cf2-RB | 313..1372 | 1..1051 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:55:53 Download gff for
FMO08236.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4881340..4882398 | 1..1051 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:58:40 Download gff for
FMO08236.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4881340..4882398 | 1..1051 | 97 | | Minus |
