FMO08237.5prime Sequence
1091 bp (856 high quality bases) assembled on 2010-03-11
> FMO08237.5prime
CAGTCGACATGTCATCCGTCATGCACTACTATCCAGTTCACCAGGCTAAA
GTCGGCTCCTATTCAGCAGATCCTTCCGAGGTTAAATACAGTGATTTGAT
CTATGGTCATCATCACGATGTTAACCCCATCGGTCTGCCTCCCAACTACA
ACCAGATGAACTCCAACCCCACCACCCTCAACGATCACTGCTCCCCGCAG
CATGTGCATCAGCAGCATGTGTCATCGGACGAGAATCTGCCATCTCAGCC
CAACCACGACTCGCAGAGGGTGAAGCTTAAGCGATCACGGACTGCCTTCA
CCAGTGTCCAACTGGTGGAACTTGAGAACGAGTTCAAGAGCAACATGTAC
TTGTACAGGACGCGCAGGATTGAGATTGCTCAGCGCTTGTCCCTGTGCGA
ACGCCAGGTGAAGATCTGGTTCCAGAACCGACGAATGAAGTTCAAGAAGG
ACATACAAGGTCACCGCGAGCCCAAGTCCAACGCCAAGTTGGCTCAACCC
CAGGCTGAGCAGAGTGCCCACCGAGGCATAGTGAAGCGCCTCATGTCCTA
CTCCCAGGATCCCAGGGAGGGCACAGCGGCAGCAGAAAAGCGTCCTATGA
TGGCAGTGGCTCCTGTGAATCCAAAGCCAGACTATCAAGCCAGCCAGACA
ATGAAGACCGAAGCATCAACCAACAACGGCATGTGCTCCAGCGCCGACCT
CAGCGAGATCTTGGGAGCATCTGGCTCAAACTACAGCTGCACCACAGGTC
AGCACTGCCACATCTAGCACAGGAACATCTACCAACTCGGCTTCTAGCTC
CTCTTCGGGCCACTATTCCTACAACGTGGATTTGGTTCTGCAGAGCATCA
AGCAGGATTTGGAGGCAGCGGGCCCAGGCTTGGTCCAAGTCTAAATCCGC
GCCTATCCTGGCCCCTCAATCCTGGCATCCCAGTCCCCAAAGTCAGGTTC
CCCACGAGCGTGCATGCGGCTCCCTCGATGGATCTGTCCTGGGGGCGAGC
CTGCTTGCCAAGTCAGAAAGCTGACGGTAATCAATTGAAACCCGTGGGTA
ACCTTCTAAAAATTATCCAACGCAAGCTTCCTAAACACATC
FMO08237.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:15:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| zen-RA | 1267 | CG1046-RA | 47..1101 | 9..1068 | 4905 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:15:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6753092..6753997 | 1005..96 | 4260 | 98.9 | Minus |
| 3R | 32079331 | 3R | 6754058..6754148 | 99..9 | 440 | 98.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:15:56 has no hits.
FMO08237.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:40:46 Download gff for
FMO08237.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| zen-RB | 16..1064 | 9..1061 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:56:46 Download gff for
FMO08237.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| zen-RA | 47..1095 | 9..1061 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:54:18 Download gff for
FMO08237.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| zen-RA | 47..1095 | 9..1061 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:54:18 Download gff for
FMO08237.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6753036..6753997 | 96..1061 | 97 | <- | Minus |
| 3R | 6754062..6754148 | 9..95 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:56:46 Download gff for
FMO08237.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2578758..2579719 | 96..1061 | 97 | <- | Minus |
| arm_3R | 2579784..2579870 | 9..95 | 100 | | Minus |
