FMO08239.5prime Sequence
1097 bp (991 high quality bases) assembled on 2010-03-11
> FMO08239.5prime
CAGTCGACATGGCGCCAAAAAAGTCCACCATTGTGCTCAATGTGGAGCAG
TTTATTCACGACATCGAGGAGCGCCCGGCCATCTGGAACCGCAATTTCCA
CTGCAACAAGGCCTTCCTCGAGCAGATGTGGGACGAGCTGAGCGGAGCGC
ACAAACTGCCAAAGATCGTTCTCAAGGCCAAATGGAAGGGACTTCGAGAC
AATTTCCGTGTGGAGTACAAAAGGATACCGCGGGCGGATAACGGTGATTT
TATGGTGGATCCGGCCACCTTTGAGTCCAAGTGGCTGCACTACTATGCAT
TGTTGTTTTTAACTGATCACATGCGTCATCGTTTGCCAAAGAACGAACAG
GATCAGTCATTTTACTTCAGCCAGCAAAGCGAGGACTGTGAAAAGACAGT
GGTGGAGCCGGATTTAACAAACGGTCTAATACGTCGTCTGCAGGACAGCG
ACGAGGATTACGACGAGGAGGAAATGGAGGCGGACGGAGAGGCTAGCGAA
GCCACCATGGAGGAAACGATGCCCACGCCACCGGCTGCGCATCAAATGAA
TCAAGTTAGCACCACACCACTGGCCACCGGAGCTTTGCGAGCCCAAGAAG
AGGCACATCAGCACGCTTTAATTAAGGCAGGATTACTCCGCGCTCAGTTG
ATGGAGCTGGAAAAGGAGGCGGAGGACTTGAGCAGAAAGCCACCTCCGCC
ACAGCAAATGACATCTCCAGTGGCACCCTCACTACAAGTGCTAGTGGAAC
CACCAGCCGCACACTGTTCTCCACCGCCAATGGTGACCACCACATCCGCA
CAAGTACAACAACCGGGCTCAGCAGCTGTTCTGGCGCCGGCAACGACCAC
ATCCGCGTCATCTGTATCCTCGAATGGAGCGCCAATGGGCGGCAAGAGAT
CTGTGTCGCCACCGCCTCTATACAACAAAGCACACCATCCGCTGGCACTC
TGGCAGCAGCAAATCTTGCGCAAAGACCGAAATTGAGGATTTCGAACCAC
CTCTGCTTAGAAGAACGAGAATCACCTGACTCATAAATCTACGCAATGAC
CGATTCCGCCTAGCTGAGGCCCGCCCTCCAAGAATGCATTTATGGTT
FMO08239.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:12:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG45071-RA | 1867 | CG45071-RA | 377..1378 | 9..1007 | 4870 | 99.3 | Plus |
| CG45071-RB | 1717 | CG45071-RB | 529..1228 | 311..1007 | 3360 | 99 | Plus |
| CG45071-RB | 1717 | CG45071-RB | 377..530 | 9..162 | 770 | 100 | Plus |
| CTPsyn-RB | 2423 | CG45070-RB | 246..399 | 9..162 | 770 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:11:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15109537..15110231 | 306..998 | 3270 | 99 | Plus |
| 3L | 28110227 | 3L | 15108805..15108958 | 9..162 | 770 | 100 | Plus |
| 3L | 28110227 | 3L | 15109334..15109491 | 159..316 | 760 | 98.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:12:00 has no hits.
FMO08239.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:40:50 Download gff for
FMO08239.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6854-RA | 375..1383 | 9..1013 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:30:05 Download gff for
FMO08239.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CTPsyn-RA | 377..1385 | 9..1013 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:52:18 Download gff for
FMO08239.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG45071-RA | 377..1385 | 9..1013 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:52:18 Download gff for
FMO08239.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15108805..15108958 | 9..162 | 100 | -> | Plus |
| 3L | 15109338..15109487 | 163..312 | 100 | -> | Plus |
| 3L | 15109544..15110248 | 313..1013 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:30:05 Download gff for
FMO08239.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15101905..15102058 | 9..162 | 100 | -> | Plus |
| arm_3L | 15102438..15102587 | 163..312 | 100 | -> | Plus |
| arm_3L | 15102644..15103348 | 313..1013 | 98 | | Plus |
