FMO08241.5prime Sequence
931 bp (901 high quality bases) assembled on 2010-03-11
> FMO08241.5prime
CAGTCGACATGGAAATCAGCATTAAATGGAGCATGTGCCGCACTTGCCGC
AAAAAAGGAACGCAATCCACGCTGCAGTCGCTCTTCGAGTCCAATGCCCA
CAAGCTGTTGATCTCGTATGCCGGCACATCTGTGAAACCGGATGATGGAC
TGCCGGATCAAATTTGCACAGTCTGCTTGATGCAACTGGAGGAGGTGGAC
AGATTTCTTAGCGCGTGCAAACAATCCGACGCGCACCTGAGAAGCCTCGT
TCGTCAAACTCTGTCCTCCGCATCGGCATTTGAGACGCTGGAGGATAAGG
ACCAGCTTGAACAGAAAAAACGCGCCAGGAAGCAGAACATTTCGGGGAGA
CTCATCGAAGAGAATCCTATTAACTTTAAGACTCAAGAGAATGCATTGGA
AACGACCAAAGATGATGAAATCTTACCCATAAATAAATTTTCAAGCGATT
TCGTGTTCGATCTCAACGTGAATGCGGAAAACGAGAAAGACATACACCAG
GAGGACTATACCATCAGTGATATGGATTTGGACAGGGAGATCTCCGATCA
AAATTACTCCGAAACGTATTCGCAAGAAAGCAGCGCTGCTACGGACAGTA
TTCAAGAGACAAGCGAGGATTACCATAATCTAGAGCCAAGTGCCGACTAC
GTGATAGATCTAGGAGTGGCCTGCGAGCCGGACAAGTACAGATGCAAGAT
CTGCAGCAATACATACCGCTGCTTATCTCAGCTAAATGCACACTCGCAGG
TGCACCGCAAGGAAAAGGACCACCAGTGCGAGGTTTGCCAAAAGACATTC
AGAGCCGCCTGCAACCTGAAAAAACACATGCGGATGCACACGGGCCGAGA
AAACCTTACCAATGTTGCTACTGTTCGCGCCGTTTTGCCGACAACAGCAC
TCATCGCAACCACGAACCGTTTGCATACGAA
FMO08241.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:39:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6808-RB | 1447 | CG6808-RB | 61..980 | 9..931 | 4480 | 99.2 | Plus |
| CG6808-RA | 3138 | CG6808-RA | 1752..2671 | 9..931 | 4480 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:39:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11622206..11622856 | 782..132 | 3255 | 100 | Minus |
| 3R | 32079331 | 3R | 11622911..11623037 | 135..9 | 635 | 100 | Minus |
| 3R | 32079331 | 3R | 11622016..11622149 | 917..782 | 535 | 96.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:39:31 has no hits.
FMO08241.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:41:03 Download gff for
FMO08241.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6808-RA | 1752..2669 | 9..929 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:36:37 Download gff for
FMO08241.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6808-RA | 1752..2671 | 9..931 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:22:55 Download gff for
FMO08241.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6808-RA | 1752..2671 | 9..931 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:22:55 Download gff for
FMO08241.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11622008..11622149 | 782..926 | 93 | <- | Minus |
| 3R | 11622207..11622856 | 132..781 | 100 | <- | Minus |
| 3R | 11622915..11623037 | 9..131 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:36:37 Download gff for
FMO08241.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7447730..7447871 | 782..926 | 93 | <- | Minus |
| arm_3R | 7447929..7448578 | 132..781 | 100 | <- | Minus |
| arm_3R | 7448637..7448759 | 9..131 | 100 | | Minus |
