FMO08242.5prime Sequence
1073 bp (972 high quality bases) assembled on 2010-03-11
> FMO08242.5prime
CAGTCGACATGATGAAACGCACTCGCGTAGACGAGGTGCAATTTGGCACA
CGACCCGTTCCTCAGACCTCCGGAGGTGTGGGCGTTGGTGTCGTCGGCGT
AACTGGAGGTGGGCCAACATCCGGCGGCGGTGGCACTGCTACTGTGGGCG
TCAATACGACGGGCGTTACCATTGGTACCGTCGTGCCCAGTGCTCATAAC
GCCACCATCAGCGGGATCGGTTCCATTCACCATCGCATCCTTACTCCACA
GCATGGAGGAGCACAAACCATTGCCTATTTGCCGTCCACCACGCCGACGG
CTACGAATTTGAAGACCACAACCTCGATTGTGGATAGCACTACCGCTGGA
GGACCAGTAGGAGCAGGAGCACAGGTGGCCGTAGGAGTTGGCTCTGCAGC
CGGCGGAGGAGGCGTGGTGGTCTCCACAGGGAGCACGGGAACGCAAACAT
TACAGTATACAACATCTTATAGTGTGGCTTCGATACAGGCTGGTGGAACT
CTGAAAGCCAACACAGCGGATGGCGCGAACACGGTACAGATTCATGTCAC
AGGAGGAGGAGCTGCAAACAATCCTGCCAGTGCACAGACTGTTTCCAGCA
GCTCACAAACGGGCACAATCCGTCAGCGTACAATCAGCGGCACCCAGACA
GTGGCCACTGCAGTGGGTAATCTAGCCACGATTTCCCAGCAACAACCGGT
TCAACAATCACCTTTGGGCAAGGCCCAAACGCCTCCATCGTCCGTGGTTG
CCAACAGTATCCCAGTGGGTGGAACCACCCCACCACAAGGACAGTCGGGA
AATGCCACGCCACGCTTAAAGTGGAGGATGCGTTGAGCTACCTGGACCAA
GTAAAGTACCAGTATGCAGACCAGCCGCAAATCTACACAACTTCCTCGAC
ATAATGAGGAATTCAAGTCGCACTGCATCGAAACACCCGGAGTGATTGAG
CGGAGTCTCCCACCTCTTCAAGGGCACACAGAGCTGAATTACGCTTCAAC
ATGTTCTTACCGCGGATACAGATCGAATCATCGGATGCTCTTGCTGTTCC
GTGCGGGGGGTCGATGCCTCCAC
FMO08242.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:08:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sin3A-RJ | 8706 | CG8815-RJ | 951..2023 | 9..1068 | 4875 | 97.8 | Plus |
| Sin3A-RI | 8130 | CG8815-RI | 951..2023 | 9..1068 | 4875 | 97.8 | Plus |
| Sin3A-RH | 7868 | CG8815-RH | 951..2023 | 9..1068 | 4875 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:08:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12584632..12585183 | 1013..466 | 2375 | 97.8 | Minus |
| 2R | 25286936 | 2R | 12585255..12585711 | 465..9 | 2285 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:08:23 has no hits.
FMO08242.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:41:07 Download gff for
FMO08242.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sin3A-RD | 926..1989 | 9..1061 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:39:40 Download gff for
FMO08242.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sin3A-RG | 799..1862 | 9..1061 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:00:08 Download gff for
FMO08242.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sin3A-RH | 951..2014 | 9..1061 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:00:08 Download gff for
FMO08242.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12584577..12585183 | 466..1061 | 96 | <- | Minus |
| 2R | 12585255..12585711 | 9..465 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:39:40 Download gff for
FMO08242.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8472082..8472688 | 466..1061 | 96 | <- | Minus |
| arm_2R | 8472760..8473216 | 9..465 | 100 | | Minus |
