FMO08243.5prime Sequence
1096 bp (983 high quality bases) assembled on 2010-03-11
> FMO08243.5prime
CAGTCGACATGGCCACACTAATACCAGTGAACGGCGGCCATCCAGCAGCG
AGCGGACAATCCTCCAATGTGGAGGCGACATATGAAGATATGTTCAAGGA
AATCACACGCAAATTGTACGGCGAGGAGACCGGAAACGGTTTGCATACGC
TCGGCACGCCGGTGGCGCAAGTGGCCACCAGCGGGCCAACAGCGGTGCCC
GAGGGCGAGCAGCGCTCCTTTACAAATCTGCAACAACTCGATCGCTCGGC
AGCGCCCAGCATTGAATACGAGTCCAGTGCGGCCGGTGCCTCTGGCAACA
ACGTGGCCACCACCCAGGCCAATGTAATCCAGCAACAACAACAGCAGCAA
CAGCAAGCGGAGTCGGGCAACTCCGTGGTGGTGACGGCCAGCAGTGGGGC
GACTGTGGTGCCGGCACCCAGTGTAGCGGCCGTTGGTGGCTTCAAGTCCG
AGGATCATCTGAGCACTGCCTTCGGGCTGGCAGCCCTGATGCAGAACGGT
TTCGCAGCCGGCCAGGCGGGTCTGCTGAAAGCCGGCGAGCAGCAACAGCG
CTGGGCTCAGGACGGATCTGGTCTGGTGGCGGCCGCAGCGGCGGAACCAC
AACTCGTGCAGTGGACCTCGGGCGGAAAGCTCCAGAGCTACGCTCATGTC
AACCAACAGCAGCAGCAGCAACAACAGCCGCATCAGAGCACACCCAAGTC
CAAAAAACACCGTCAGGAGCATGCGGCTGAATTGATCTACGCCAGCCCCT
CCACATCGGCCAATGCGGCCCAAAATCTGGGCCCAATCCACACCCACCTC
AGCGCCCAGCAACAGCAGTGGCGGCAGCACCAGCTCCTCCGGCGGAGGAG
CGTCGGAAGACGCCGCCCAAGCGGCTGCAGCTGCCGCTGCGGCGATGAGT
GCACATCAGAGCGTTACGCCTGTACGCACTGTCATACTCGACGACGGCGG
ATCTGTACACCCGACATGAAAACATCCACAGGACGGAAGCCCTTCCAGGT
GCTTTGCCTGCTCAAGCAGTCACCGAGCGATCATGTCAGAAAGCACTCTG
CCAATGACCGGAGCTGAATACAACATTACAGAACGGGAATGTTTTC
FMO08243.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:03:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| chn-RI | 4468 | CG11798-RI | 342..1431 | 9..1078 | 4750 | 97.1 | Plus |
| chn-RH | 5459 | CG11798-RH | 474..1563 | 9..1078 | 4750 | 97.1 | Plus |
| chn-RG | 5666 | CG11798-RG | 474..1563 | 9..1078 | 4750 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:03:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15138508..15138981 | 230..703 | 2370 | 100 | Plus |
| 2R | 25286936 | 2R | 15138215..15138436 | 9..230 | 1110 | 100 | Plus |
| 2R | 25286936 | 2R | 15139079..15139365 | 704..980 | 890 | 93.8 | Plus |
Blast to na_te.dros performed 2014-11-28 19:03:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2289..2511 | 619..851 | 167 | 58.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6822..6888 | 652..721 | 162 | 74.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2341..2535 | 652..843 | 159 | 60.3 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1056..1131 | 649..721 | 156 | 71.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2626..2887 | 652..908 | 154 | 54.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1487..1543 | 298..355 | 152 | 75.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6729..6925 | 652..836 | 152 | 61 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6789..6858 | 652..721 | 143 | 67.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1549..1613 | 652..715 | 142 | 70.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2338..2517 | 652..837 | 141 | 59.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6750..6938 | 652..843 | 140 | 57.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6840..7002 | 652..817 | 135 | 60.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2797..2877 | 652..730 | 130 | 64.2 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 6582..6634 | 639..691 | 130 | 71.7 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 8038..8090 | 639..691 | 130 | 71.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2386..2550 | 652..812 | 129 | 58.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2313..2339 | 330..356 | 126 | 96.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6725..6751 | 330..356 | 126 | 96.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6746..6772 | 330..356 | 126 | 96.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6767..6793 | 330..356 | 126 | 96.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2842..2928 | 658..746 | 125 | 64.8 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1104..1143 | 652..690 | 125 | 82.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6771..6873 | 652..753 | 124 | 64.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2607..2663 | 296..356 | 124 | 72.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6768..6837 | 652..721 | 124 | 67.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2374..2631 | 652..905 | 123 | 56.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6800..6842 | 330..371 | 122 | 79.1 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 971..1007 | 650..686 | 122 | 81.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2334..2359 | 330..355 | 121 | 96.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2388..2413 | 330..355 | 121 | 96.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6788..6813 | 330..355 | 121 | 96.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1115..1140 | 330..355 | 121 | 96.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1128..1162 | 652..686 | 121 | 82.9 | Plus |
| BS | 5142 | BS BS 5142bp | 2090..2133 | 654..697 | 121 | 75 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2494..2550 | 652..707 | 120 | 70.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2774..2843 | 295..362 | 120 | 65.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2796..2828 | 330..362 | 120 | 84.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1527..1582 | 296..355 | 119 | 71.7 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3587..3629 | 319..362 | 118 | 77.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2400..2426 | 330..356 | 117 | 92.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6833..6859 | 330..356 | 117 | 92.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6867..6902 | 652..687 | 117 | 80.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2362..2395 | 652..685 | 116 | 82.4 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7420..7453 | 655..688 | 116 | 82.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2404..2454 | 652..700 | 114 | 74.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2446..2496 | 652..700 | 114 | 74.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2319..2381 | 296..356 | 112 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2936..3007 | 295..364 | 112 | 63.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6804..6838 | 652..686 | 112 | 80 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 5644..5702 | 326..383 | 112 | 67.8 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 7099..7157 | 326..383 | 112 | 70 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 969..1003 | 651..685 | 112 | 80 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2401..2431 | 652..682 | 110 | 83.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6717..6747 | 325..355 | 110 | 83.9 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3262..3310 | 628..676 | 110 | 69.4 | Plus |
FMO08243.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:41:10 Download gff for
FMO08243.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| chn-RA | 379..1440 | 1..1052 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:20:40 Download gff for
FMO08243.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| chn-RG | 469..1530 | 1..1052 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:38:20 Download gff for
FMO08243.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| chn-RG | 469..1530 | 1..1052 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:38:20 Download gff for
FMO08243.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15138210..15138436 | 1..230 | 98 | -> | Plus |
| 2R | 15138509..15138981 | 231..703 | 100 | -> | Plus |
| 2R | 15139079..15139440 | 704..1052 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:20:40 Download gff for
FMO08243.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11025715..11025941 | 1..230 | 98 | -> | Plus |
| arm_2R | 11026014..11026486 | 231..703 | 100 | -> | Plus |
| arm_2R | 11026584..11026945 | 704..1052 | 93 | | Plus |
