FMO08245.5prime Sequence
1057 bp (937 high quality bases) assembled on 2010-03-11
> FMO08245.5prime
CAGTCGACATGTTGTGGATAATGGGGCTAGTAGTGGCCGCTGTGCGGCTC
AATGGACAGGCGAGCGGTGCGGCAAATGTCACGGTAATCGAAGACATTAG
GAGCGCCTTCAGAGGCGTCACCAACGACACGGAGCTGCTGAATCACATAA
TACCGGAAATGTACGGGGCGAGCATGCGCAGTGCGAATCCCTCCTTTGTC
TTCAAAATGCCTAGCAAATCGAACGGCGGTGGCGACGACTTCGAGCTGCT
AACAATGCAGCGATCCGATTTCGCGGAACCAATCTTCCCCAATATCAGCC
AGTCGGCCACGGCCATCGATTCACCCAGTACCATTCCGCCGGAAACGAGC
GTGAAGACCAGTCTCATGGTATCGCCGCAACAGGATTGGCAGCAGATGGG
TCTGGATGGCTGGACGGGGGAGCTGAAGCCACCAGTAGCCTCGCTGGAGC
AGGATCATAGGGACACTCGACCGCCGATCAGCTGGCAGAACTCGTATCCC
CACGACGAGATTCGTCTGGAGTTCCAGAACCACCACTTCGATGGCCGGGT
GACGGACATACGCGTGATAACACAAACAACTAGTAAACCAGCTGAGATGG
AGGACCTGATGAATGTTCAGAATGTGTACATAGCGCGGGTAAACGATCCC
TTCGGTTACTCCATGAAGTGGAGCTTCACCAACGACAGCAGCCGGGAAAA
AGAGCTTTTGCCGGAGGGAGATCGCGGAAAGAGGGACGTTGCTCGGCTGT
ACTCCATGATCAAGTGCTCCACGGGCTGTGATCCGCTGATCTACAAGGCT
ACGGCTGCTACTGCGGATTCGTGGCCACGGAGTGCCCGCCGATGGCATCG
ATCGCTGTTGTCGCGTGCACGACAAGTGCTACGGTCAGAGCAACTGCATC
TCTATCTGGATACTTTGTGCCTACGTGGTGAGTGCTACGCGCAAGCGCTG
TGCGCGTCGATCATGGCGAGTCGTGACCGACTCTTGGGCGCTCGTTCCTG
CAATGCAACTGGGCTTTCAGTGCCTCAGGAGAACTCTGCCCAACGGAGCT
CATTGCA
FMO08245.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:08:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14507-RC | 1233 | CG14507-RC | 47..1091 | 7..1031 | 4600 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:08:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29227225..29227679 | 461..7 | 2275 | 100 | Minus |
| 3R | 32079331 | 3R | 29226472..29226938 | 921..459 | 2135 | 99.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:08:33 has no hits.
FMO08245.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:41:14 Download gff for
FMO08245.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14507-RC | 1..989 | 9..983 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:39:42 Download gff for
FMO08245.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14507-RC | 40..1037 | 1..983 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:00:12 Download gff for
FMO08245.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14507-RC | 40..1037 | 1..983 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:00:12 Download gff for
FMO08245.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29226400..29226936 | 461..983 | 96 | <- | Minus |
| 3R | 29227226..29227682 | 1..460 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:39:42 Download gff for
FMO08245.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25052122..25052658 | 461..983 | 96 | <- | Minus |
| arm_3R | 25052948..25053404 | 1..460 | 99 | | Minus |
