FMO08246.5prime Sequence
878 bp (878 high quality bases) assembled on 2010-03-11
> FMO08246.5prime
CAGTCGACATGGCTCACTTCAGTGGTCATCGCCAGCCGGCGACGGTGCCG
TCCCATTTCAAGGATCTCTTCACCAATGGCCAGTTGGGTGCGGCGGAGGA
GAGCAACAATAATGACCAGAACGAGCAGGAGAATCGTCCCAGTAACAATA
ACAATGCTGGACCTTCGGATCCCGCCTGCTGGGTCTTCGGTTACGGATCC
TTGTGCTGGCATCCTGGCTTTAATTACACCAAGTGCATTACGGGATATAT
TCGAGGATATGTTCGCCGCTTCTGGCAGGGCAACGTCACACATCGCGGCT
GTGAAGAGAAGCCTGGACGTGTTGCAACGCTCGTTGAGGACAAAGAGGGA
ATCACTTGGGGCTGCGCCTACAGAATAACAGGCAGCACGGCACTGGATTA
TCTCAAGCAGCGGGAGTGCACACTGGGTGGCTATGCAACAATCGATACCA
AGTTCTTCCCGCGCGTCGCCTCGCAGGACACGCCCTTCAGCGGCGAGGCG
GTCGAGGTACTGGTCTATGTGGCGACGCCAGAGAATATCTATTGGTTGGG
CGATGACCCGGTCGAGGAGATTGCCCAGCAGATCGTATCCTGCCGCGGTC
CCAGCGGACACAATGCCGAGTACCTGTTGCGCCTGGCCCTGTTCATGCAC
GAGGAGATTCCCGGCGTGAGGGACGATCATCTGTTCGAGCTGGAGCAATT
GGTTTTAGAGGAACTGTACCGCCGCCAAATACCTCTGTCATCTGTGATGG
GCCGCAATCCAGATAGGATACGCCGCGACTCGCACGAGGACATCCGCCGC
CCGCCATCCTTCGAGTTCACCTCCCGTGTGCCCGACACCAAGCTGCGTTG
CCTGAACATTGCAAGCTTTCTAGACCAT
FMO08246.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:19:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10365-RD | 1642 | CG10365-RD | 519..1370 | 9..860 | 4260 | 100 | Plus |
| CG10365-RA | 1427 | CG10365-RA | 304..1155 | 9..860 | 4260 | 100 | Plus |
| CG10365-RB | 1473 | CG10365-RB | 350..1201 | 9..860 | 4260 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:19:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23730793..23731227 | 426..860 | 2175 | 100 | Plus |
| 3R | 32079331 | 3R | 23728857..23729159 | 9..311 | 1515 | 100 | Plus |
| 3R | 32079331 | 3R | 23730647..23730729 | 346..428 | 415 | 100 | Plus |
| 3R | 32079331 | 3R | 23729935..23729973 | 310..348 | 195 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:19:28 has no hits.
FMO08246.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:40:39 Download gff for
FMO08246.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10365-RA | 257..1113 | 1..860 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:58:45 Download gff for
FMO08246.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10365-RB | 345..1201 | 1..860 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:55:56 Download gff for
FMO08246.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10365-RB | 345..1201 | 1..860 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:55:56 Download gff for
FMO08246.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23730794..23731227 | 427..860 | 100 | | Plus |
| 3R | 23728852..23729159 | 1..311 | 98 | -> | Plus |
| 3R | 23729937..23729972 | 312..347 | 100 | -> | Plus |
| 3R | 23730649..23730727 | 348..426 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:58:45 Download gff for
FMO08246.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19554574..19554881 | 1..311 | 98 | -> | Plus |
| arm_3R | 19555659..19555694 | 312..347 | 100 | -> | Plus |
| arm_3R | 19556371..19556449 | 348..426 | 100 | -> | Plus |
| arm_3R | 19556516..19556949 | 427..860 | 100 | | Plus |
