FMO08247.5prime Sequence
1095 bp (944 high quality bases) assembled on 2010-03-11
> FMO08247.5prime
CAGTCGACATGCCTAAGAATGGCGATGCCGGCAACCGGAGCGGTTCCGGG
ACAACCAGCGACGGCTGCATCTATCCGGACGACGTCATAATGGGCGTGGG
TGTTGCATTCAACGTGCGGTACACGGGATGCGTTGAGGTCAAGACCTCAA
TGAAATCCCTGGACTTCGAGACCCGTACGCAGTTAGCGCGAGAGTGCATC
AATCGAGTTTGCGAGGCGGCCGGTTTAAAGTCTGCTGGCAAGCGGAGATT
AACCAACTTCATATCGGATCGACCCAGCATGCAGCACGCCGGCACCAACA
TCATCATTAATGTATCGAGCCGTGCTCTGTCGCTAAGCAACGTGGAAACG
GGCGAGGTTATAGCCAATCACAATATGCCGCGCATATCGTTCGCGTCCGG
CGGTGACAATGACACCCTCGACTTCCTCGCCTACATAGCCAAGAATGAGG
ATGAATGGCGGGCATGTTATGTCCTGGAATGCGCTGGCGGCCAAAGCGAG
GATCTAATAGTGACCATTGGCAAGGCGTTTGCCTTGCGCTTCAACGCTCT
CAGTAGGCTCAATGATCCCTCGGCGGATTGTAACATCAATCAAAGCTGCA
AGGAGAATGTGAAGGAGTACTACAACGATTTGCCAAACAAGCTGCCACCA
GAAGTGCCGGAACCACAACAACAGCAGGTGCAGCAACCTCTCCATCCGCA
TGCGCCTCGTGTGGCACAACTGAATCTGAAGAAGCCTCGCGATCGCCTGA
GCAGCAACCTCATCGACCTCAACTCCCCGCCTCCCGATCAGACGACCAAT
AAGTTAGGCCACTTTGATCCCCTCCAGCGACCACAGCTGCCAATTCTGTT
TGCCTCTGTCGCGATGTGTTCGACGGACCGCATGCCCGCTCAAAGCGGAG
GGTGTTCCATGCGGCATATCAAGACCAATATCGACGTTTGCTGCAGCAAG
ACGCAACTTTCTGGTGCGCGAGTCCAGGAAAGCGGGCAGTACGTACATAC
CCGAATAAAGGGCAAACGCCAGCATCTGCCTCTCTCCGATCCCGAGGGTG
GTCGAAACAAAAATCCACCTCCACAGATAACATCTGAATCAACTA
FMO08247.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:34:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Shc-RA | 1600 | CG3715-RA | 134..1211 | 9..1065 | 4685 | 96.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:34:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9427386..9428262 | 190..1048 | 3425 | 95.9 | Plus |
| 3L | 28110227 | 3L | 9427143..9427324 | 9..190 | 910 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 21:34:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6863 | 635..776 | 135 | 58.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6741..6987 | 640..882 | 135 | 54 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6765..6893 | 640..773 | 135 | 60 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2301..2379 | 627..705 | 125 | 62 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2368..2502 | 640..773 | 114 | 54.8 | Plus |
FMO08247.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:40:40 Download gff for
FMO08247.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Shc-RA | 139..1120 | 1..974 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:37:59 Download gff for
FMO08247.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Shc-RA | 129..1110 | 1..974 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:27:02 Download gff for
FMO08247.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Shc-RA | 129..1110 | 1..974 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:27:02 Download gff for
FMO08247.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9427138..9427324 | 1..190 | 97 | -> | Plus |
| 3L | 9427387..9428181 | 191..974 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:37:59 Download gff for
FMO08247.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9420238..9420424 | 1..190 | 97 | -> | Plus |
| arm_3L | 9420487..9421281 | 191..974 | 98 | == | Plus |
