FMO08248.5prime Sequence
996 bp (928 high quality bases) assembled on 2010-03-11
> FMO08248.5prime
CAGTCGACATGCGTCCCCCAGAGTTCAAGCTTAACAATCCGCCGGAGGAC
CTGATCTCCGCTGTGAAATTCGGCCCCAAATCGAATCAATACATGGCGGC
GTCTTCTTGGGACGGAACACTTAGATTCTATGATGTGCCGGCAAACCAGC
TGCGTCAGAAATTCGTGCAGGATGCCCCTCTTCTCGACTGTGCCTTCATG
GACATAGTGCACGTGGTCAGTGGCTCCCTGGACAACCAGCTGCGTCTCTT
TGATGTCAACACCCAGGCGGAAAGCATAATTGGTGCCCACGAGGAGCCCA
TCAGATGCGTGGAGCACGCCGAGTATGTCAATGGCATCCTCACGGGTAGC
TGGGACAATACCGTGAAGCTGTGGGACATGCGGGAGAAGCGCTGCGTTGG
AACCTTCGAACAGAACAACGGAAAGGTGTACTCCATGTCCGTGATCGACG
AAAAGATCGTGGTGGCCACCTCCGACCGCAAGGTGCTCATCTGGGACCTT
CGCAAGATGGACAGCTACATCATGAAGCGGGAGTCCTCGCTCAAGTACCA
GACCCGCTGCATTCGTCTATTCCCCAACAAAGAAGGCTACGTGATGTCCT
CCATCGAGGGACGGGTGGCAGTGGAGTACCTGGATCACGATCCTGAGGTG
CAGCGCCGCAAGTTCGCTTTCAAGTGCCACCGGAATAGGGAGCAGAATAT
CGAACAGATCTACCCCGTTAATGCCTTGAGTTTCCACAATGTCTATCAGA
CGTTCGCCACTGGCGGATCCGATGGCATTGTGAACATTTGGGATGGCTTC
AACAAGAGCGCCTTTGTCAGTTCCACGAATACGATACCTCCATATCCACG
CTCAACTTCAGCTCCGATGGCAGCGCCCTGACCATCGGCTGCTCTACTTG
ACCAACTGCAGAGACGCCGGCTACAGTGCACATCCGCTATCTAATTACGC
TATCCCACGGAACAGAAACTAACAGAAAGCAAGCTTTCTAAGACAT
FMO08248.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:14:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Bub3-RB | 1362 | CG7581-RB | 114..1091 | 9..978 | 4630 | 98.8 | Plus |
| Bub3-RA | 1236 | CG7581-RA | 114..1091 | 9..978 | 4630 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:14:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29674293..29675064 | 965..200 | 3500 | 98.7 | Minus |
| 3R | 32079331 | 3R | 29675116..29675308 | 201..9 | 965 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:14:21 has no hits.
FMO08248.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:40:43 Download gff for
FMO08248.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bub3-RA | 112..1092 | 9..982 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:36:36 Download gff for
FMO08248.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bub3-RA | 114..1094 | 9..982 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:51:58 Download gff for
FMO08248.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bub3-RA | 114..1094 | 9..982 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:51:58 Download gff for
FMO08248.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29674275..29675063 | 201..982 | 98 | <- | Minus |
| 3R | 29675117..29675308 | 9..200 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:36:36 Download gff for
FMO08248.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25499997..25500785 | 201..982 | 98 | <- | Minus |
| arm_3R | 25500839..25501030 | 9..200 | 100 | | Minus |
