FMO08250.5prime Sequence
1093 bp (928 high quality bases) assembled on 2010-03-11
> FMO08250.5prime
CAGTCGACATGTTACCCAATTGGCTTACCGAAGAATATTTACAGCCGAAA
TTGAGGGCTTACTACAAGGATGATCAGCTGAAGGTCGTGAAAGTCTGGGC
AAAGCCAGCAACCGAAAAAGGTCAAAACTACATGAGCCTTATGACCCGTA
TCCACGTGGAGATTCAGCAGGGCGATGGATTATTGCAAAATAGAACCTAC
ATTATCAAGGAATCCCTATCAGAAGATTGTCCCCAGGCGAAGGTATTTTT
GGAGTATGATGTGTATAACCGGGAAATGGATATGTACGAGTTTATCCTGC
CGAAAATGAATGAACTTCTTCAAGAAGTTGGCCTTACTGGAAAGTTCACT
GCAGATACGATTTTCGTAGACCGGGAATACAGAACCATAATATTGGAAGA
TCTGGCGCAGTATAACTACGTGAATGCGGATCGGGTGAAGCAGCTGGATC
TGGCTCATACGAAATTGACTTTGGAAGTGTTGGCAAAGTTCCATGCAGCA
TCCATTGTCGTGAAACAGCGCCATCCCGAACTCCTGACCAAGAGCCTTTT
TATTCACTGTTTTTCGCGAGACAATAAAGGTTACACGGAGGTGTACGAAG
GTGTTTTATCGGCTTTTATAAGGTTCATAAATGAACAACCAGTTTTAAAG
AAAAAGTACGGTAATAAATTACAAAAAAATACATGAAAATATCATGGATT
ATGGAGCCAGGACCTTTGAGGTCGGAGAACAAGAACTGCTGACCTTAAGT
CATGGTGATTGCTGGACCACCAACTTTTTGTATCAGTATGATGATGCGAG
CAATCCCCAATCAGCCGTAGCCATAGACTTTAATTCAGCAACTTCACCTC
CCCTGTCAACGACTTGCATCAATTCTTCACCGTTCACTGCGAGATGAATT
CAGGACATGGAATCCGTTCTTGTTGAAAATTACTACGCGACCTCAAAACG
ACGTGGATACTCTTGTCTTATAAGGGATAATTTTCTAGCCTCCAGGGTCC
AAAACAGTCGAAAGCCTCAATCAGGGTCTGGGTAACCCATCTCTTCAGCC
GGTTAAAAATACGACGGCCCTGAACGGACACTAACTCTCCCAG
FMO08250.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:33:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16898-RA | 1325 | CG16898-RA | 31..1107 | 9..1074 | 4760 | 97 | Plus |
| CG33301-RB | 1563 | CG33301-RB | 37..602 | 9..574 | 445 | 72.4 | Plus |
| CG33301-RA | 1318 | CG33301-RA | 37..602 | 9..574 | 445 | 72.4 | Plus |
| CG33301-RB | 1563 | CG33301-RB | 718..908 | 691..880 | 180 | 73.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:33:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20003982..20004973 | 997..9 | 4515 | 98.6 | Minus |
| 2L | 23513712 | 2L | 10049616..10050181 | 9..574 | 445 | 71.9 | Plus |
Blast to na_te.dros performed 2014-11-28 19:33:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Burdock | 6411 | Burdock DMU89994 6411bp Derived from U89994 (g1905850) (Rel. 51, Last updated, Version 1). | 4926..4984 | 673..729 | 119 | 69.5 | Plus |
FMO08250.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:41:20 Download gff for
FMO08250.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16898-RA | 7..973 | 1..963 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:32:57 Download gff for
FMO08250.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16898-RA | 7..973 | 1..963 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:19:48 Download gff for
FMO08250.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16898-RA | 23..989 | 1..963 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:19:48 Download gff for
FMO08250.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20004015..20004981 | 1..963 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:32:57 Download gff for
FMO08250.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15891520..15892486 | 1..963 | 98 | | Minus |
