FMO08251.5prime Sequence
1082 bp (966 high quality bases) assembled on 2010-03-11
> FMO08251.5prime
CAGTCGACATGGGCAAGGAGAAGATCCATATTAACATTGTGGTCATTGGC
CATGTGGACTCCGGCAAGTCGACGACCACCGGCCACTTGATCTACAAATG
CGGCGGCATCGACAAGCGTACGATTGAGAAGTTCGAGAAGGAGGCCCAGG
AAATGGGAAAAGGCTCCTTTAAGTACGCCTGGGTACTGGACAAGCTGAAG
GCAGAGCGGGAGCGGGGCATCACCATCGACATTGCCCTATGGAAGTTCGA
GACGTCCAAGTACTATGTGACCATCATCGATGCCCCTGGTCACAGGGATT
TCATCAAGAACATGATTACCGGTACCTCTCAGGCCGATTGTGCGGTGCTG
ATCGTCGCCGCCGGAACTGGAGAGTTCGAGGCCGGGATCTCGAAGAACGG
CCAGACCCGCGAGCACGCCCTTCTGGCATTCACGCTGGGCGTGAAGCAGC
TTATTGTGGGCGTCAACAAGATGGACTCCACTGAGCCGCCGTACAGCGAG
GCCCGCTACGAGGAGATCAAGAAGGAGGTGTCCTCGTACATCAAGAAGAT
CGGCTACAATCCGGCCTCGGTGGCCTTCGTGCCCATCTCCGGATGGCACG
GCGACAATATGCTGGAGCCGTCCGAGAAGATGCCCTGGTTCAAGGGATGG
TCCGTGGAGCGCAAGGAAGGCAAGGCAGAGGGCAAGTGCTTGATCGACGC
GCTGGACGCGATCCTTCCACCCCAGCGTCCCACCGACAAGCCGCTGCGCC
TGCCGCTCCAGGACGTCTACAGATCGGAGGCATCGGAACCGTACCAGTAG
GTCGTGTGGAGACTGGTCTCCTCAAGCCAGGCATGGTCGTCAACTTTGCG
CCGGTCTACCTGGTCACCGAAGTAAAGTCTGTGGAGATGCACCACGAGGC
TCTTCACCGAGCCATGCCCGGCGACAACGTTGGCTTCAACGTGAAGACCG
TGTCCGTGAAGAGCTCCGCCCTGGCTATGTGGCCCGCCATTCCAGAACAT
CCTCCTAGGGGAGCACGACTTAACCGCTCAGTGATGTGCTCACCATCGGC
CAATCCCAATGGATCCTCCCGTCCTGAATGCA
FMO08251.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:19:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ef1alpha100E-RD | 2603 | CG1873-RD | 178..1244 | 9..1062 | 4880 | 97.9 | Plus |
| Ef1alpha100E-RC | 2591 | CG1873-RC | 166..1232 | 9..1062 | 4880 | 97.9 | Plus |
| Ef1alpha100E-RB | 2594 | CG1873-RB | 169..1235 | 9..1062 | 4880 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:19:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31740347..31741170 | 9..831 | 4070 | 99.9 | Plus |
| 2R | 25286936 | 2R | 11893573..11894528 | 7..961 | 2390 | 83.6 | Plus |
| 3R | 32079331 | 3R | 31741624..31741832 | 828..1031 | 650 | 91.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:19:41 has no hits.
FMO08251.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:41:21 Download gff for
FMO08251.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ef1alpha100E-RC | 163..1213 | 2..1047 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:58:54 Download gff for
FMO08251.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ef1alpha100E-RB | 166..1216 | 2..1047 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:56:04 Download gff for
FMO08251.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ef1alpha100E-RB | 166..1216 | 2..1047 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:56:04 Download gff for
FMO08251.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31740344..31741169 | 2..830 | 99 | -> | Plus |
| 3R | 31741627..31741814 | 831..1015 | 94 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:58:54 Download gff for
FMO08251.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27566066..27566891 | 2..830 | 99 | -> | Plus |
| arm_3R | 27567349..27567536 | 831..1015 | 94 | == | Plus |
