FMO08252.5prime Sequence
1103 bp (976 high quality bases) assembled on 2010-03-11
> FMO08252.5prime
CAGTCGACATGCAGTGGCTCAAAATGAAGCTTCGCTTCGTAAACTTAATT
TTACTATTAATAAGCTCAACATGTGCCCAATTGGGGGGCGATCCCAATGG
CTACCTCACCTACTGTCCGTGTATGGGACGCTTTGGCAACCAGGCCGACC
ACTTCCTGGGATCATTGGCCTTCGCCAAGGCGCTTAATCGCACCCTGATC
CTGCCGCCGTGGGTGGAGTATCGTAGGGGTGAACTGCGATCCCGTCAGGT
ACCGTTCAACACATATTTTGAAGTGGAGCCCCTGAAGGAATACCATCGCG
TCATCACCATGGCAGATTTCATGTGGCACCTGGCCGACGACATTTGGCCA
GAATCGGAGCGAGTGTCATTTTGCTACAAGGAACGATATAGCCTTCAGCA
GGAGAAGAACGATCCAGACAAGCCCAATTGCCACGCCAAGGATGGCAATC
CTTTTGGTCCCTTTTGGGACACTTTTCACATAGACTTTGTGCGGTCAGAG
TTCTATGCGCCACTTCATTTTGATGTGCATCATAGCAACGAGGCTGCCAA
GTGGCAGACCAAATATCCTGCAGAATCATATCCCGTACTCGCGTTCACCG
GAGCTCCGGCTAGTTTTCCTGTTCAGCTAGAGAACTGCAAGCTGCAGCGC
TACTTGCAGTGGAGTCAACGGTATAGGGAAGCATCTAAGGATTTCATCCG
AGAGCAGTTGCCTCGGGGTGCCTTTTTGGGCATTCATCTGCGCAACGGTA
TCGATTGGGTGAGAGCCTGTGAGCACGTCAAGGATAGCCAGCATCTGTTT
GCCTCGCCGCAGTGCTTGGGCTATAAAATGAACGTGGTGCACTCTACCGG
AGCTCTGCATGCCCTCCAAGGAGGCGATCATCCGCCAGCTAAAGAGACCA
TTAGACGTGCGCCAAACTCAGCCGGACACGAATCAAATCAGTTTCGTGGC
GTCAGACTCCAATCACATGATGGTGACTAAACACCGCCTAGTCGCATGGG
CATCAGGTGCCAAGCTGCCGAGATGATCTTACCTGAACTTGCATCCCGAC
AGTCCAACACTTTATCGGCACTGTATTCTCTTACTCGAATCGAAAAGGGA
CGA
FMO08252.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:17:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| O-fut1-RB | 1570 | CG12366-RB | 34..1137 | 9..1087 | 4855 | 97.4 | Plus |
| O-fut1-RA | 1337 | CG12366-RA | 34..1137 | 9..1087 | 4855 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:17:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14161635..14162527 | 126..1006 | 3910 | 98.2 | Plus |
| 2R | 25286936 | 2R | 14161463..14161581 | 9..127 | 595 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:17:49 has no hits.
FMO08252.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:41:22 Download gff for
FMO08252.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| O-fut1-RA | 21..1132 | 1..1087 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:30:48 Download gff for
FMO08252.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| O-fut1-RA | 26..1137 | 1..1087 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:58:09 Download gff for
FMO08252.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| O-fut1-RA | 26..1137 | 1..1087 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:58:09 Download gff for
FMO08252.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14161455..14161580 | 1..126 | 96 | -> | Plus |
| 2R | 14161636..14162621 | 127..1087 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:30:48 Download gff for
FMO08252.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10048960..10049085 | 1..126 | 96 | -> | Plus |
| arm_2R | 10049141..10050126 | 127..1087 | 97 | | Plus |
