FMO08253.5prime Sequence
933 bp (932 high quality bases) assembled on 2010-03-11
> FMO08253.5prime
CAGTCGACATGTACCACAGTAGCGCCGTTGCGGCATACACGGACCTGGCT
GCCGCCGGTAGTGCCGCAAGCGCCGGAGTCGGAGTCGGGGTGTCCGGCTA
TCACCAGCAGGCGGTAAACGCTCCCGTTTACGTGCCATCCAACCGACAGT
ACAACCACGTGGCCGCTCATTTTGGAAGCGCTGCGGCGCAGAATGCCTGG
ACCACGGAAGGATTCGGATCGGCGCATGCACAGTTCTACTCGCCAAACGC
CGCTGTGATGATGGGCTCGTGGCGCAGTGCCTACGATCCGTCGGGCTTCC
AAAGATCCTCGCCCTACGAGAGCGCTATGGACTTCCAGTTTGGCGAGGGA
CGCGAGTGCGTCAATTGCGGTGCCATATCGACTCCGTTGTGGCGACGGGA
TGGAACCGGACACTATCTGTGCAACGCCTGCGGACTGTACCATAAGATGA
ACGGAATGAACCGGCCGCTGATCAAGCCTAGCAAGCGCCTGGTGAGTGCA
ACTGCCACTCGGAGGATGGGCTTGTGCTGCACCAACTGCGGCACTCGGAC
CACCACACTTTGGAGACGCAACAACGATGGCGAACCCGTGTGCAATGCCT
GCGGACTGTACTACAAGTTGCACGGTGTTAACAGACCACTGGCCATGAGG
AAGGATGGCATTCAGACCAGGAAACGAAAGCCCAAGAAAACGGGAAGTGG
TTCGGCGGTGGGAGCGGGCACTGGATCCGGAACAGGCTCCACTTTGGAGG
CATCAAGGAGTGCAAGGAGGAGCATGATCTCAAACCCTCGCTCAGCCTGA
GCGCCATAGCCTCAGTAAGCTGCACACGGATATGAAGAGCGGCACCAGCA
GTAGTAGCACCTTGATGGACATCACAGCGCGCAGCAGCAGCAGCAGCAGC
AAAGCAACAACAACAGCAACAGCAGCAGCAGGA
FMO08253.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:35:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pnr-RD | 3840 | CG3978-RD | 890..1816 | 9..931 | 4520 | 99.5 | Plus |
| pnr-RA | 2720 | CG3978-RA | 651..1577 | 9..931 | 4520 | 99.5 | Plus |
| pnr-RB | 2786 | CG3978-RB | 717..1643 | 9..931 | 4520 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:35:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16038716..16039207 | 9..500 | 2460 | 100 | Plus |
| 3R | 32079331 | 3R | 16039270..16039546 | 501..776 | 1320 | 99.3 | Plus |
| 3R | 32079331 | 3R | 16039614..16039772 | 776..931 | 645 | 98.1 | Plus |
| 3R | 32079331 | 3R | 8160976..8161109 | 478..345 | 370 | 85.1 | Minus |
| 3R | 32079331 | 3R | 16018047..16018168 | 567..688 | 265 | 81.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:35:35 has no hits.
FMO08253.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:41:24 Download gff for
FMO08253.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pnr-RA | 839..1773 | 1..932 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:38:20 Download gff for
FMO08253.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pnr-RB | 709..1643 | 1..932 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:27:19 Download gff for
FMO08253.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pnr-RB | 709..1643 | 1..932 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:27:19 Download gff for
FMO08253.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16038708..16039207 | 1..500 | 99 | -> | Plus |
| 3R | 16039270..16039546 | 501..776 | 99 | -> | Plus |
| 3R | 16039615..16039772 | 777..932 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:38:20 Download gff for
FMO08253.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11864430..11864929 | 1..500 | 99 | -> | Plus |
| arm_3R | 11864992..11865268 | 501..776 | 99 | -> | Plus |
| arm_3R | 11865337..11865494 | 777..932 | 97 | | Plus |
