FMO08262.5prime Sequence
866 bp (866 high quality bases) assembled on 2010-03-11
> FMO08262.5prime
CAGTCGACATGAAAATGGATGTTATTGCTCGGGAACAAATCATCTACGGT
AGCCTGCAGGGATCAAACAAAAATAAAGATTGGACCAGCAGACTGCCACC
GCCGTCGGCATACACTCTGGACCTGATGTCCAAGAAGGCCAAGACGACAA
CCGGGGGCAGCAGCAATGGCAGCAATGCTACCGCCACATCCACAACCACA
TCCACATCCAGCAGTATTAAGCACAAGCAGCCGGCGGGCAGCAGCAACAA
CAATGTTGGCCAAAGTCAGAGCAAGAAGACAAAGCCCAGCGGCAGCTATA
ATAGCAATAGCAACTACTACTACTACGCTGCTGACGAGGAGGAGGGCGGT
AGCGCTGACTATGCACTGAGCAACTACGATAAGAAGGCTGTCGAGGAGCT
GTCCCTGCGATTGCTCGACGAACTGAGGGCGGCCAAGTCGCGTCATTTGA
CCTGTACGGAAGTGTCGCTACCCTGTGATCTCACGCCGAGCGTGGCCCGG
GAAATAATCCGCGTGTCGGAGAAGGAGCCCCGCGGCATACGCGGCTGCAC
CATCTACATTGAGTTCGAGGATGAGCCGAAGAATTCGCGTCGCATTGCCT
CGATCAAGGTCGATTCGGATACGGTGTCCACATTCGAAGTGTATCTGACC
CTCAGGCAGGATCATCGCGGCTGGACGTCGCTGTTGCCGCAGTTCATGAA
GAGTTTGGCCCGCACGATCACCATCAGTCCGGAGTATACGATCACCAAGA
ATAAGCTATATTCCGCTGATGGTTTGGGTGCACGCAGGAGCTATAGCTTC
GGCAGCCACGCCCATAGACCCAGTGCGGCCATCGCCACGCCCACCAACGC
AAGCTTTCTAGACCAT
FMO08262.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:54:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| scyl-RC | 3124 | CG7590-RC | 585..1424 | 9..848 | 4200 | 100 | Plus |
| scyl-RA | 2195 | CG7590-RA | 585..1424 | 9..848 | 4200 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:54:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11253701..11254472 | 77..848 | 3860 | 100 | Plus |
| 3L | 28110227 | 3L | 11252891..11252960 | 9..78 | 350 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 21:54:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2305..2472 | 156..326 | 207 | 61 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2291..2448 | 168..326 | 179 | 61.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6713..6868 | 173..326 | 143 | 60.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6757..6845 | 238..323 | 131 | 64 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6736..6809 | 238..314 | 126 | 64.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2314..2409 | 220..317 | 116 | 59.2 | Plus |
FMO08262.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:41:33 Download gff for
FMO08262.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| scyl-RA | 581..1425 | 5..852 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:49:10 Download gff for
FMO08262.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| scyl-RA | 583..1427 | 5..852 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:36:39 Download gff for
FMO08262.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| scyl-RA | 583..1427 | 5..852 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:36:39 Download gff for
FMO08262.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11252889..11252960 | 5..78 | 97 | -> | Plus |
| 3L | 11253703..11254475 | 79..852 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:49:10 Download gff for
FMO08262.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11245989..11246060 | 5..78 | 97 | -> | Plus |
| arm_3L | 11246803..11247575 | 79..852 | 99 | | Plus |
