FMO08263.5prime Sequence
313 bp (209 high quality bases) assembled on 2010-03-11
> FMO08263.5prime
CAGTCGACATGGAGAAGCTAACGAATGTTCAGGCACAGCAGGAAGAGGAG
GAGGAAGAAGGTCCACTCAGCGTGACTAAGTTAATAGGCGGCAGCATCAC
GGCCAAGGACATCAAGCTGCTCCAGCAGGCCAGTCTGCACACCGTGGAGT
CGGTGGCCAATGCCACCAAGAAGCAACTGATGGCCATTCCCGGCCTTGGG
GCGGCGGCAAGGGTGGGAGCAGGATCATCACGGGAGGCTAAACAAAACTT
GGGGTGGCCCTTCTGGGGGCTTTCCCTTTTAAGTGGCCTTCGCAACCCCT
TTTCCTATTCAAA
FMO08263.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:26:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| spn-A-RA | 1279 | CG7948-RA | 99..325 | 9..241 | 1015 | 97.4 | Plus |
| spn-A-RB | 1342 | CG7948-RB | 240..388 | 87..241 | 625 | 96.1 | Plus |
| spn-A-RB | 1342 | CG7948-RB | 99..177 | 9..87 | 395 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:26:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30055675..30055798 | 212..87 | 550 | 97.6 | Minus |
| 3R | 32079331 | 3R | 30055861..30055939 | 87..9 | 395 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:26:40 has no hits.
FMO08263.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:41:41 Download gff for
FMO08263.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| spn-A-RA | 100..345 | 1..259 | 94 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:23:46 Download gff for
FMO08263.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| spn-A-RA | 92..337 | 1..259 | 94 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:12:11 Download gff for
FMO08263.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| spn-A-RA | 92..337 | 1..259 | 94 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:12:11 Download gff for
FMO08263.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30055638..30055798 | 87..259 | 93 | <- | Minus |
| 3R | 30055862..30055946 | 1..86 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:23:46 Download gff for
FMO08263.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25881360..25881520 | 87..259 | 93 | <- | Minus |
| arm_3R | 25881584..25881668 | 1..86 | 96 | | Minus |
