FMO08264.5prime Sequence
1022 bp (930 high quality bases) assembled on 2010-03-11
> FMO08264.5prime
CAGTCGACATGAGGGAACCACTGCCCGTGGCGGTGGTGACGTTGCTCCTG
TTCCTGTGGCTCGGTTCGGCGATGCCACCCACATCTGGTTCGGCGGTGCT
CATCTCCGACATGACCATGAGCGTCATGGTGGAGCTATCCTCGCGACATC
CCTTCTGCAAGATGCACACAGATCGTGGTGATATCCAGCGCATGTTGCTG
CAATCGGATCCGCGACGCATACGCCAGGTGCCGCGGGAGTCGGTGATGGA
GCTCGAGGAGGTGTGCCGCCGTCAGGGATCCTATGGCCACGAGTTTCGCG
GCGGACTGGGCTTCATCTATCCGGGCACAAAGTGGTGCGGACCGGGCACA
GCGGCCACCAGCTACGACGATCTCGGTGCGCACGCTCGCGAGGATCGCTG
CTGTCGCGAGCACGACATGTGTCCCGATGTGCTAAATGTGGGCGAATGCA
GGCGAGGATTGTGCAATCGCGGCACATTCACGAGAAGCCACTGCGATTGC
GATGCCCGGTTCAGGCGATGCTTGCAGGCGGCAAACACGGAGACGGCCAA
TACGCTGGGCGCCATCTTCTACAATGTGGTGCAGGTGACGTGCTTCCAGG
AGCGGAGTCCCTGCTCGGCACACCAGAGGTTCGAGGACTTCTACTACCGC
ACCGATCACTGTCCGGCGGAATTCCGGCAGGCGGATCTCTATGTGCCGCC
GCACGGTGACAATCTGATAGCCAAGATCCTGGCCCATCCGCAGGGCGGGG
CCCTGCCCGCTCCGTCCTGACGATTCCCGCCAAGTCGACGGCGCGCCGTT
GGGGCGTTAATTGCCAGCGTTGGCTTGCGGCGGTGATATCCTGCGGGAGT
GTGCAGCGACCCGACTCCTGTGGGATAGCTGCAGCGCCGGTCTCCAGGGA
CTACCACCGCGCAAAGATATCACGATCGGGCTATCACTACGAGCCGACCC
GGACCCGGGTCGTCTACGATATGCATACGTGTCGCGGTAACTGGGGCTTC
GACTCCCCTTGAGCCAGCTTCT
FMO08264.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:56:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3009-RB | 2056 | CG3009-RB | 278..1300 | 8..1011 | 4530 | 97.5 | Plus |
| CG3009-RA | 2475 | CG3009-RA | 278..1300 | 8..1011 | 4530 | 97.5 | Plus |
| CG3009-RD | 1277 | CG3009-RD | 278..898 | 8..628 | 3105 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:56:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 4659387..4660188 | 964..175 | 3310 | 97.6 | Minus |
| X | 23542271 | X | 4660258..4660425 | 175..8 | 840 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:56:32 has no hits.
FMO08264.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:33:12 Download gff for
FMO08264.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3009-RC | 265..1262 | 1..978 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:50:27 Download gff for
FMO08264.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3009-RA | 268..1308 | 1..1022 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:37:42 Download gff for
FMO08264.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3009-RA | 268..1308 | 1..1022 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:37:42 Download gff for
FMO08264.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 4659325..4660187 | 176..1022 | 96 | <- | Minus |
| X | 4660258..4660428 | 1..175 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:50:27 Download gff for
FMO08264.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 4553358..4554220 | 176..1022 | 96 | <- | Minus |
| arm_X | 4554291..4554461 | 1..175 | 97 | | Minus |
