FMO08265.5prime Sequence
1086 bp (952 high quality bases) assembled on 2010-03-11
> FMO08265.5prime
CAGTCGACATGGAGGAATTTAATTCGAGCGGATCAGTAGTTAATGGTACA
GGATCTACGGAAGTTCCTCAATCTAATGCTGAAGTTATAAGGGGACAAAT
ATTTGAAGTTGGTCCTAGGTATATTAAACTCGCCTATATAGGTGAAGGAG
CTTATGGCATGGTTGTGTCTGCGGATGACACGCTAACAAACCAAAGAGTT
GCAATAAAAAAAATATCGCCCTTTGAACACCAAACTTATTGTCAAAGGAC
TCTCAGAGAAATAACCATATTGACCAGATTTAAACATGAAAACATTATTG
ATATTCGAGATATTCTTCGAGTTGATAGCATAGACCAAATGAGAGATGTT
TATATTGTACAGTGTTTGATGGAGACTGATTTGTATAAACTACTTAAAAC
ACAGAGGCTAAGTAATGATCACATCTGTTACTTCTTATATCAGATATTGC
GTGGACTCAAGTACATTCATTCCGCAAACGTCTTGCATCGGGACCTTAAG
CCAAGTAATTTACTGTTGAACAAGACGTGCGACTTAAAAATTTGCGACTT
TGGATTGGCTCGTATTGCAGATCCCGAGCACGATCATACTGGCTTTCTCA
CAGAATACGTTGCTACCCGATGGTATAGAGCACCTGAAATAATGCTTAAC
TCAAAAGGATACACCAAATCTATAGACATATGGTCCGTTGGCTGCATTTT
GGCTGAAATGTTAAGTAATCGGCCAATATTTCCTGAAAACATTACCTGTA
TCAACTTAATCATATTCTTGGAGTATTGGGTTCACCGTCCCGGGACGATT
TAGAGTGTATTATTAATGAAAAGGCACGGAACTATTTGGAATCTTTACCA
TTTAAGCCAAATGTACCCTGGCGAACTATTTCCAAATGCTGATGCGTTGG
CTTTAGATCTCCTTGAAAAATGTTAACATTTAACCCGCATAAACGGATTC
CTGTCGAGGAAGCTCTTGCCATCCCTATTTAGAGCAATATTATGATCTGG
AATGACCTGTCGCTGAAGTGCATTCCGATAAATGAATGATGACTTCTCGA
ATGCCCTGAGTCGTGATTTGAAACCTAATTAGAGCA
FMO08265.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:14:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rl-RI | 2072 | CG12559-RI | 102..1183 | 8..1069 | 4910 | 98 | Plus |
| rl-RC | 1614 | CG12559-RC | 126..1207 | 8..1069 | 4910 | 98 | Plus |
| rl-RD | 1795 | CG12559-RD | 307..1388 | 8..1069 | 4910 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:14:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 1113198..1113485 | 540..826 | 1375 | 99.3 | Plus |
| 2R | 25286936 | 2R | 1212216..1212504 | 540..826 | 1225 | 96.5 | Plus |
| 2R | 25286936 | 2R | 1207919..1208207 | 540..826 | 1195 | 95.8 | Plus |
| U | 3151297 | U | 1722541..1722804 | 566..826 | 1035 | 95.5 | Plus |
| 2R | 25286936 | 2R | 1072281..1072441 | 8..168 | 805 | 100 | Plus |
| 2R | 25286936 | 2R | 1113535..1113714 | 822..997 | 705 | 96.7 | Plus |
| 2R | 25286936 | 2R | 1208257..1208436 | 822..997 | 705 | 96.7 | Plus |
| U | 3151297 | U | 1722854..1723033 | 822..997 | 705 | 96.7 | Plus |
| 2R | 25286936 | 2R | 1105844..1105981 | 402..539 | 690 | 100 | Plus |
| 2R | 25286936 | 2R | 1212554..1212733 | 822..997 | 660 | 95 | Plus |
| 2R | 25286936 | 2R | 1076635..1076761 | 167..293 | 635 | 100 | Plus |
| 2R | 25286936 | 2R | 1080331..1080441 | 294..404 | 555 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:14:56 has no hits.
FMO08265.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:41:48 Download gff for
FMO08265.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rl-RE | 73..1115 | 1..1033 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:36:46 Download gff for
FMO08265.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rl-RE | 78..1120 | 1..1033 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:52:14 Download gff for
FMO08265.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rl-RD | 300..1342 | 1..1033 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:52:14 Download gff for
FMO08265.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 1072274..1072439 | 1..166 | 97 | -> | Plus |
| 2R | 1076635..1076761 | 167..293 | 100 | -> | Plus |
| 2R | 1080331..1080441 | 294..404 | 100 | -> | Plus |
| 2R | 1105847..1105981 | 405..539 | 100 | -> | Plus |
| 2R | 1113198..1113482 | 540..823 | 99 | -> | Plus |
| 2R | 1113537..1113725 | 824..1005 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:36:46 Download gff for
FMO08265.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2RHet | 232561..232695 | 405..539 | 100 | -> | Plus |
| 2RHet | 198988..199153 | 1..166 | 97 | -> | Plus |
| 2RHet | 203349..203475 | 167..293 | 100 | -> | Plus |
| 2RHet | 207045..207155 | 294..404 | 100 | -> | Plus |
| 2RHet | 239912..240196 | 540..823 | 99 | -> | Plus |
| 2RHet | 240251..240439 | 824..1005 | 96 | -> | Plus |
