FMO08267.5prime Sequence
1060 bp (941 high quality bases) assembled on 2010-03-11
> FMO08267.5prime
CAGTCGACATGCGGAGCCCAGAAACGGACAGTGAGCACTCGGAAACGGAC
TCCGTCGGCTCCTCCACGGACAGTCAGTCGAGTGGATTGGGCGCGGTGCG
CCACCAGCGACGGAGCGCCCAGCGCACGGATGTCTTCAGCCTCAAGGCCA
TGGCGCCTAGGCCAAATGCCGGACCCGGCGGCTGGTTATGTCTACTGCTG
CCGCTGGCCTTGACCGTCCGCCTGTTGCGCCACGCCACGCCGGCATGCAA
GGACCAGGCCAGGATGCAGTGTCTCCTCACGGTGGCCGCCGGCGGTATGG
CCCTTGAAACGCTGTGTTTCTTCATCTATGCCTTTGTGAAGACGGGCATT
TTGGTTAAATGCCTGGTCAGCCTGCTGCCCGGAGTGGCCACCAGTTTGAG
CTTCTATCTGCTGGTGGACACCTCACTGACCTTCGCCATCATCGTGGGAT
TCGTGATGACCTCTGCTTATCAGCAAATCTATATTTACACGCTACGTGGC
TTCCAGAGATCCTTCACGTATGGCGAAGCCTCGGTTTTCGTCCAGGGACT
GGTGCTCTTCGCTTTGAGTGCCATCCATCGACTAGGTGGATTCTTTTGCG
GCGGTTCTTGGCCAACCGAGGAATTTGATACGCTCAACATGATCATGGTG
AATGCCCTATTTTGCCTGCTGGTGTTCTGCGTGGCTCTCGTCCTCTTTCC
AACGCTGAGGAAGCCATGTCGCTTCTACTTGTGGACGGTGATGCTCCTCT
TGGCTGTCACCTGCATGCCGGTGACGCGACCTCTTCCTCTGCTGGCACTT
GTGCAGTTCCTGCTCCGCGATCAGGAGAGACTGGCCATCTTGTCTTCTAT
ATGCTGCTGGATGTGCTAACCTGCCTCACAGTCCGCCTGGCAAATTGGAA
GCCCCCGCTAAGCAATTAACGTGTGCCCAGATCTTCCACCTGCTCATTGT
TATGGCCTATATACCCGGATTGATCTTCGAGTGCGCCCTGCTCTAACTTG
GCACTGGCGTGCGTTGCTGTTTCCTGGTCCTGGACCGCTCGCCTGCCTGA
AGAATACCGC
FMO08267.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:08:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8311-RA | 1897 | CG8311-RA | 137..1193 | 9..1060 | 4810 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:08:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16588327..16588819 | 650..158 | 2465 | 100 | Minus |
| 2R | 25286936 | 2R | 16587893..16588256 | 1011..650 | 1415 | 95.6 | Minus |
| 2R | 25286936 | 2R | 16588896..16589048 | 161..9 | 765 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:08:55 has no hits.
FMO08267.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:41:50 Download gff for
FMO08267.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8311-RA | 112..1156 | 1..1042 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:39:48 Download gff for
FMO08267.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8311-RA | 128..1172 | 1..1042 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:00:24 Download gff for
FMO08267.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8311-RA | 128..1172 | 1..1042 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:00:24 Download gff for
FMO08267.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16587859..16588255 | 651..1042 | 94 | <- | Minus |
| 2R | 16588327..16588816 | 161..650 | 100 | <- | Minus |
| 2R | 16588897..16589057 | 1..160 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:39:48 Download gff for
FMO08267.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12475364..12475760 | 651..1042 | 94 | <- | Minus |
| arm_2R | 12475832..12476321 | 161..650 | 100 | <- | Minus |
| arm_2R | 12476402..12476562 | 1..160 | 97 | | Minus |
