FMO08268.5prime Sequence
1094 bp (965 high quality bases) assembled on 2010-03-11
> FMO08268.5prime
CAGTCGACATGGCCAGTCGCCAAGCCGGTTTCGTCCTAGACGCCAAGTCC
ATGGGTCTGAATCCGTCGAGACCTGCATCATCGCCACCGCCACCACCATC
ATCTGCCAGTCAAATGTGTCGGCAAGTGCAGCCAACCGGAACGAGTGCCT
CGCATCCACATCAAGAATCGACGCTAAAAGCCTCATCTCCTGATCGGTGC
ACTGCCAGCACCGAGGCGATGTCCACCGAACATTACCGCTGTCTGATCCA
GAAGCTGCGGGATACCAACGGCGATGCTGGCGATATGAGCTTTGAGCTGA
ACAGCATATTTCTGAAGCGGCTGGACGAGATTGACTGCCTAGATGAGCAC
GAGGGTGATGACATGCACACTTGCCAGTTGCGTCTGGTCACTTTTCAGGA
GTGGGTGGATTTCCTGCTCCACGTGAACAGCGTGATCCTGGGCAACGTGT
CGGACTTGGAGAAGGAGGCGTACAGCAAGATCGTTGCCTGCTGTCAGTCT
GTCCAAGTGCGACAACAGCATACCCTCGAGGAGAATCGTAGGCTGCGTGA
GGACATTTGTGCGATCATAGAACGCGTGCAGCATTCTCCTCACTGCACCG
ACTTTGATTTCAATGGCATTTCCCTAGAGACACTGACCGTTAATCAATTG
CGGGGCGTGGGAAAGGATCCCGCCCACGCGGAATGCGAGAGCGAGAAGAT
GTCCGAGAGCATGAAGTCCTTAGTCGGCGAGATAGCCGCCAAGCATGACG
AGATCGGCGAACTGAAGTCACAGATCAATGCCTTGGACGAGGTTGTACAC
ACGGCCAGGCAGAAGTTACTTTTGAAGGATCAGTGCATAGCACAGCTCAA
TCAACAGCTGCACGAGATCACCCGGTGCATTGAGTCCAGAGATCAGGCCA
AATGGAGGAATCGCCCAACGATACACTGACCGCGGACGCGATTACAAGCG
ATATTGCTCGAGAATCTTCCCGATCACGAACACCAGAGAGCGAATGCTGC
GGCTTCTAACGCCGGAACTCATGATCTTCTCGACCTGCACACAACCAGAG
AGTCGACCATTGGGATCCGCGGAACGGTGTCTCGCTTTATCGAA
FMO08268.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:08:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| yuri-RQ | 3658 | CG31732-RQ | 566..1661 | 8..1094 | 4890 | 97.4 | Plus |
| yuri-RC | 2555 | CG31732-RC | 566..1661 | 8..1094 | 4890 | 97.4 | Plus |
| yuri-RB | 2920 | CG31732-RB | 101..1196 | 8..1094 | 4890 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:08:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 15263770..15264127 | 365..8 | 1790 | 100 | Minus |
| 2L | 23513712 | 2L | 15263332..15263665 | 698..365 | 1670 | 100 | Minus |
| 2L | 23513712 | 2L | 15262970..15263130 | 857..697 | 805 | 100 | Minus |
| 2L | 23513712 | 2L | 15262440..15262631 | 1041..853 | 490 | 89.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:08:36 has no hits.
FMO08268.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:41:51 Download gff for
FMO08268.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yuri-RC | 564..1612 | 8..1053 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:44:55 Download gff for
FMO08268.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yuri-RB | 101..1149 | 8..1053 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:00:14 Download gff for
FMO08268.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yuri-RB | 101..1149 | 8..1053 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:00:14 Download gff for
FMO08268.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 15262428..15262626 | 858..1053 | 91 | <- | Minus |
| 2L | 15262970..15263128 | 699..857 | 100 | <- | Minus |
| 2L | 15263332..15263664 | 366..698 | 100 | <- | Minus |
| 2L | 15263770..15264127 | 8..365 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:44:55 Download gff for
FMO08268.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 15262428..15262626 | 858..1053 | 91 | <- | Minus |
| arm_2L | 15262970..15263128 | 699..857 | 100 | <- | Minus |
| arm_2L | 15263332..15263664 | 366..698 | 100 | <- | Minus |
| arm_2L | 15263770..15264127 | 8..365 | 100 | | Minus |
