FMO08270.5prime Sequence
1089 bp (962 high quality bases) assembled on 2010-03-11
> FMO08270.5prime
CAGTCGACATGTTGACGCACAAAACTTGTCAGGCACGTAAGAAAATGCAG
GTTTCCTTCGTGATACGGGACGCCGAGGAGAAACAGCACCGGAATGGCGT
AAACGCTCTGCAGCTGGATGCCAATAACGGCAAGTTGTACTCCGCCGGTC
GCGACGCCATAATCCGTGTGTGGAATACACGGACGGACTCCAGCGAGAAG
TACATACAATCGATGGAGCACCACAACGACTGGGTCAACGACATAGTACT
TTGCTGTAATGGCAGGAACCTTATTAGCGCCAGCTGTGATACCACGGTGA
AGGTGTGGAACGCCCAGAAAGGCTTCTGCATGTCCACCCTGCGGACCCAT
CGCGACTACGTGCAGGCGTTGGCCTACGCCAAGGATCGGGAACAGGTGGC
CAGCGCTGGACTGGACAAGGCCATCTTCCTGTGGGACGTGAACACACTGA
CCGCGCTCACGGCGAGCAATAACACGGTTACCACCTCTAGTCTAACCGGG
TCCAAGGACTCAATCTACAGCTTGGCCATGAATCCATCGGGCACCGTGAT
TGTGAGCGGGTCCACGGAGAATATACTGCGTATCTGGGATCCCCGCACCT
GTATGCGCAGAATGAAGCTGCGAGGCCATACGGAGAACGTGCGCTGCTTG
GTGGTGTCGCCCGATGGAAACCAGGTGGTGTCTGGCAGTTCCGACGGCAC
GATCAAGGTGTGGAACCTGGGCCAACAGCGCTGTGTTCAAACCATCCACG
TGCACAAGGAGGGCGTGTGGTCGCTGCTGATGAGCGAGAACTTCCAGTAC
ATCATCTCCGGCAGTCGGGATCGCAACATCATTGTGACCGAGATGCGGAA
CCCTAGTAACAAAACGCTTGTGTGCGAGGAGCAGCGCCCGTGCTGAGTCT
GGGCTACAACATCGACAGGACTGGGGTGTGGGGCCACACCTGGAACTCGG
ACATTCGCGTTGGAAGCTGCCCTGTACGAAAGGGCCAACCTAATTCCTTC
GGGGGAATGTACCACAATTGGACCAGGGCGGACCTGAAGTGCCGCTTAAA
GTGGGAAGCCCATCAGGATGCGCGGGCTAACACAACGTT
FMO08270.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:03:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9062-RC | 2849 | CG9062-RC | 180..1221 | 5..1041 | 4800 | 98 | Plus |
| CG9062-RB | 3035 | CG9062-RB | 243..1284 | 5..1041 | 4800 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:03:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11282620..11283323 | 972..271 | 3360 | 99.1 | Minus |
| 2R | 25286936 | 2R | 11283386..11283608 | 270..48 | 1115 | 100 | Minus |
| 2R | 25286936 | 2R | 11283682..11283729 | 52..5 | 240 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:03:31 has no hits.
FMO08270.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:41:29 Download gff for
FMO08270.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9062-RB | 224..1209 | 1..983 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:20:30 Download gff for
FMO08270.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9062-RB | 239..1224 | 1..983 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:38:13 Download gff for
FMO08270.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9062-RB | 239..1224 | 1..983 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:38:13 Download gff for
FMO08270.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11282608..11283323 | 271..983 | 99 | <- | Minus |
| 2R | 11283386..11283605 | 51..270 | 100 | <- | Minus |
| 2R | 11283684..11283730 | 1..50 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:20:30 Download gff for
FMO08270.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7170113..7170828 | 271..983 | 99 | <- | Minus |
| arm_2R | 7170891..7171110 | 51..270 | 100 | <- | Minus |
| arm_2R | 7171189..7171235 | 1..50 | 94 | | Minus |
