Clone FMO08271 Report

Search the DGRC for FMO08271

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:82
Well:71
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG30194-RD
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO08271.5prime Sequence

1030 bp (897 high quality bases) assembled on 2010-03-11

> FMO08271.5prime
CAGTCGACATGTGCACCGCTGGCGTGGTTGATGGTGGTGCTGGGGCCACT
ACAGGTGGTGCTGATGCGGCTGATAATAGTGGAGCTGCGCCCGCCCCAAG
TTCGACGGCCTTGAACCCCCCACAGGTCTCCATTTCCATGAACGAACCGG
AAAACCTGAAACCACCTGCCAAATCCAACTTCCGCCGTTATCTTCAGTGG
ATCCTAGCACCTGTCCTGACCGCCATTTCCGGTCTGATCCTCTACTACCA
AGGGCCTTGGTATGGAGTGGCCACGCTATATGCCGCATTGATATCCATAC
TGCTGGTGCGTCCAGGATGGCGCTGGTTCTACATTGCAGCTGTTACCACA
CCCAGGGATACTGTAGCCCTCTTTGCCTACATCCGTGTGCTGCTCTTCAT
TAAGCGCCAGGAGCGCAAGAACCTGAACATCGGAGACATCTTTGAGTCAA
ATGTGGCCCGGCAGCCGGATAAACTGGCCATTGTCAGTGAGTCCCAGCAG
TGGACCTTCCGCCAGGTGAACGAGCATTCGAACCGGGTGGCCAACGTGTT
CCACAGTCACGGCTACAAAAAGGGCGACGTGGTGGGTCTGCTGCTCGAGA
ATCGCGCCGAATTTGTAGCCACCTGGCTTGGTCTCTCCAAGATCGGCGTG
ATCACGCCGCTGATTAACACAAACCTCCGTGGAGCCTCACTGCAGCACAG
CATTACCGTGGGCCAGTGCACGGCGCTCATTTACGGCGCCAGTTTCCGGT
CGGCCGTGATGGATATCGCCAAGGATCTGCCCGCCCACGTCGGACTGTAT
CAGTTCAACGACGAGTCCAACAGGAGTGGTGGCTTCCGAGGGCCTTAGCC
AGGACTGGCCCAGCATTGAACGGCCTTCTGGAGACGGCGGCAAGGATAGT
GCCGCGGCGCTTCTCGGCGATCATCACGACAGTGGTCTACTCTACACGTC
GGAACACGGCTTGCCAGCAGCCGTCATCTACGCGATTCTCGTAACTTTTC
TAGCTGTCGGATCATAACGCTTGATTCAGG

FMO08271.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:26:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG44252-RD 2651 CG44252-RD 215..1223 9..999 4490 97.5 Plus
CG44252-RE 2745 CG44252-RE 309..1317 9..999 4490 97.5 Plus
CG44252-RB 2538 CG44252-RB 217..1110 124..999 3915 97.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:26:33
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23059352..23059882 365..891 2455 99.2 Plus
2R 25286936 2R 23059053..23059293 124..364 1205 100 Plus
2L 23513712 2L 10513191..10513446 738..483 620 82.8 Minus
2R 25286936 2R 23057517..23057635 9..127 595 100 Plus
Blast to na_te.dros performed on 2014-11-28 23:26:34 has no hits.

FMO08271.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:41:30 Download gff for FMO08271.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30194-RD 185..1201 1..999 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:23:42 Download gff for FMO08271.5prime
Subject Subject Range Query Range Percent Splice Strand
CG44252-RE 301..1317 1..999 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:12:08 Download gff for FMO08271.5prime
Subject Subject Range Query Range Percent Splice Strand
CG44252-RE 301..1317 1..999 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:12:08 Download gff for FMO08271.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 23057509..23057633 1..125 97 -> Plus
2R 23059055..23059293 126..364 100 -> Plus
2R 23059352..23060005 365..999 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:23:42 Download gff for FMO08271.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18945032..18945156 1..125 97 -> Plus
arm_2R 18946578..18946816 126..364 100 -> Plus
arm_2R 18946875..18947528 365..999 96   Plus