FMO08272.5prime Sequence
1071 bp (962 high quality bases) assembled on 2010-03-11
> FMO08272.5prime
CAGTCGACATGGAATTGGCGATTTGTAAAACAGATCTGTCTGCCACGAAA
TTTATGCTGCCGCCCGCTTTGCCCTCCTCAGCGGCCATTGGTTCCTCGTC
GGCGGTCGCCTCCACGGCCTCGCATTTCCTGGATAAGGCGGCCCACGAGC
TCTTTCAACTGAACGCCATCAACGGACACCTGTTCAAGTCGCCGGCCAGC
AGCCACCTCAATTCGGTCGGCAGTCCGTCGATACTTAGCCAATTGAACGG
CATCGGCAACAGCGGCAACCATTCGGGCCAAGTTAGCACCATGAGGCTCA
AGAAGAACCGCAAAGTCACCTTTCTGTCCAGCCTAGTTGAGTCGAAAAAT
ATTTTCATCAAGGAGGAGCCGATCCATGGATGCAAGGATCTGTGCAGTTT
GTCGGATATTTCAGATCATGAGGCATCATTAGAAGTTCCCACCGCCTTGC
CACCCCTCACGCCGGGCACCAATCGCAAGGTCAACGAGGTACTGAAGGCA
TCCTTTGCCTCCTGGGAAAAGGAGGTCCAAAAATGCAACATAACCAAAGA
TCCGCGTGAATGGACGGAGGAGCATGTCATCTACTGGCTCAATTGGGCTA
AAAATGAGTTCTCATTGGTCTCCATGAACCTGGACCCCTTCTACAAGATG
AAGGGACGCGCCATGGTGGATCTGGGCAAGGAGAAGTTCCTGGCCATCAC
GCCGCCCTTCACCGGCGACATACTGTGGGAGCACTTGGACATCCTGCAAA
AAGATTGCGAGAAACCAAATGAGGATATTGTGCACGGCAATTCCTTTGAG
TCGGCCACCACGGCCTCGGTCTGTGGATCGGACCACCAGTGCCAATTACC
CAACGAGACGCACGCCAACAGCAACAACAGCAGCATAAACAGCCGCCTGT
CCATGGATTATGTGACGTCGGCGGGGATAGGGATAATAAAAACTTCCACC
CGCGCCACGCCCCACTCCACATGGCTACACACAGCACACACACGACGGAT
CACACAGACGCCCCCGAGAATAGAAATCGCAGCAGCGGATTTCATGCACG
GTAGGCCAGCAGCACAACAAT
FMO08272.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:14:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pnt-RB | 4074 | CG17077-RB | 784..1866 | 9..1071 | 4765 | 97.3 | Plus |
| pnt-RD | 2805 | CG17077-RD | 650..1310 | 431..1071 | 2655 | 95.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:14:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23340182..23340514 | 341..9 | 1665 | 100 | Minus |
| 3R | 32079331 | 3R | 23312887..23313092 | 753..548 | 1030 | 100 | Minus |
| 3R | 32079331 | 3R | 23311989..23312208 | 968..752 | 860 | 96.8 | Minus |
| 3R | 32079331 | 3R | 23313442..23313560 | 549..431 | 595 | 100 | Minus |
| 3R | 32079331 | 3R | 23337896..23337988 | 432..340 | 465 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 19:14:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6770..6815 | 851..896 | 131 | 76.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6728..6770 | 851..893 | 125 | 76.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6749..6791 | 851..893 | 125 | 76.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2381..2415 | 862..896 | 121 | 82.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6749 | 865..893 | 118 | 89.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2382..2424 | 851..893 | 116 | 74.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2331..2361 | 866..896 | 110 | 83.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6818..6848 | 866..896 | 110 | 83.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1115..1145 | 866..896 | 110 | 83.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2318..2364 | 850..896 | 109 | 70.2 | Plus |
FMO08272.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:41:32 Download gff for
FMO08272.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pnt-RB | 773..1741 | 1..968 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:36:44 Download gff for
FMO08272.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pnt-RB | 778..1746 | 1..968 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:52:09 Download gff for
FMO08272.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pnt-RB | 778..1746 | 1..968 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:52:09 Download gff for
FMO08272.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23311989..23312206 | 754..968 | 97 | <- | Minus |
| 3R | 23312887..23313090 | 550..753 | 100 | <- | Minus |
| 3R | 23313442..23313558 | 433..549 | 100 | <- | Minus |
| 3R | 23337896..23337986 | 342..432 | 100 | <- | Minus |
| 3R | 23340182..23340520 | 1..341 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:36:44 Download gff for
FMO08272.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19137711..19137928 | 754..968 | 97 | <- | Minus |
| arm_3R | 19138609..19138812 | 550..753 | 100 | <- | Minus |
| arm_3R | 19139164..19139280 | 433..549 | 100 | <- | Minus |
| arm_3R | 19163618..19163708 | 342..432 | 100 | <- | Minus |
| arm_3R | 19165904..19166242 | 1..341 | 98 | | Minus |
