FMO08274.5prime Sequence
1097 bp (976 high quality bases) assembled on 2010-03-11
> FMO08274.5prime
CAGTCGACATGCAGAATTCTCCGGCTCCGTGTGCCTGGTACTTGCCCTGG
TCCCTGGCCGCCCAGCAGCACCAGCAAAAGATGCTGCAAATGCAGTCGCC
GTTTCTGGACAAGATGGGCGCCACATCGGTGGGCGGCATCTTCGCTGGCC
AGCCGCAGATGCAGCAACAATTGTCGCCCAATACGGCAGCAGCACCGCCG
GCAAACTATCAGCAGCCCGCTTTGCATCCAAGCGCCGCACCAGGCGCACC
ACACTTCCACATGGGATCCCCGTATAGCCATCTGGCACCGCAGCTCCTCA
ACGCCGGACAGCTGAACCAGAACGCACTGATGCACTCCGCCATGTTCTCT
TCCCTGCCACTTGGTGCGTACTATGCACCCGCCGCCGGCGCAGGTCACTC
GGCCTTTGGTGGCGTTCCCCTGACCACGGCTGCCCAGCAATCTCTATTGG
CCGCCACCGGAGGAGCAACTGCTGGCCATTTGGCCAACCAGCAGACGACG
GCTCAAGTGCCCGTCCAGGTGCCCGTGCAAATGGCCCAACGGACAGCTCC
GGCCGCCTGCTCCATGGTCCAGCCACTTAACTGCCTGCCGCACCAGGAAC
TGAATCACCTGTCGTCCATCAATCTCAACCTGCTGCGCAGTCCGGCGCCT
CCGCTCCCAGCCATTCAGGTCTTGCCAAGTGCCGAGGTGCCGATTAATAA
GAAGACTACTTCTCCCAGGGACTCTGAGAATCTTAAAATCAAGGTTCCAG
AAAAGCGGAAAACAGACGATAATGATCAGATAAAAGAGCTAAAGAAAGCT
AAACTGGAGACAAAGCATTGAAGGCTAAGAGGCCGGGATTCACGGATGAA
GATACCAGGAAACATCCTACTATATGGAAAACGGTCTACGCAGTGTATCC
GTACTACTTTACATTCACAACATTTACAAAAGTCGCTGGGTGGGCGAAAA
GATATTGATATATTCTCGCGAGAATTCGGCACTCCGCTGAGAATATGAAC
GTTGTATCCAACTGGCAATTGACAGGTCACTTTGAAAAGGTACCATGGAC
TATCGGCTGAAACATAACGATCCTCCCGCAAATTGTCAAGACGAGTT
FMO08274.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:09:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RluA-1-RD | 2715 | CG31719-RD | 113..1201 | 9..1083 | 4985 | 98.1 | Plus |
| RluA-1-RC | 2914 | CG31719-RC | 224..1312 | 9..1083 | 4985 | 98.1 | Plus |
| RluA-1-RB | 3207 | CG31719-RB | 517..1605 | 9..1083 | 4985 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:09:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10471476..10472171 | 704..9 | 3480 | 100 | Minus |
| 2L | 23513712 | 2L | 10466357..10466452 | 798..703 | 480 | 100 | Minus |
| 2L | 23513712 | 2L | 10465947..10466147 | 1083..893 | 430 | 89.1 | Minus |
| 2L | 23513712 | 2L | 10466213..10466302 | 885..798 | 350 | 97.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:09:02 has no hits.
FMO08274.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:41:56 Download gff for
FMO08274.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RluA-1-RC | 383..1481 | 1..1083 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:39:50 Download gff for
FMO08274.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RluA-1-RB | 507..1605 | 1..1083 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:00:28 Download gff for
FMO08274.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RluA-1-RB | 507..1605 | 1..1083 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:00:28 Download gff for
FMO08274.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10465947..10466158 | 884..1083 | 91 | <- | Minus |
| 2L | 10466215..10466302 | 798..883 | 97 | <- | Minus |
| 2L | 10466358..10466450 | 705..797 | 100 | <- | Minus |
| 2L | 10471476..10472176 | 1..704 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:39:50 Download gff for
FMO08274.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10465947..10466158 | 884..1083 | 91 | <- | Minus |
| arm_2L | 10466215..10466302 | 798..883 | 97 | <- | Minus |
| arm_2L | 10466358..10466450 | 705..797 | 100 | <- | Minus |
| arm_2L | 10471476..10472176 | 1..704 | 99 | | Minus |
