FMO08275.5prime Sequence
1112 bp (996 high quality bases) assembled on 2010-03-11
> FMO08275.5prime
CAGTCGACATGCCTCATACACACAGCAGGCATGGATCATCAGGAGATGAT
TTATGCAGTACTGATGAAGTGAAGATTTTTAAAGACGAAGGAGATCGCGA
GGATGAAAAAATATCATCTGAGAACTTATTAGTTGAAGAAAAGTCTAGCT
TAATAGATTTAACTGAAAGTGAGGAAAAGGGTCACAAAATTTCAAGGCCG
GACCACAGCCCTGTTTTTAATAAGCTGGACACCCACGCCCCTAGCTTTAA
CATGGGTTACTTAGTTTCTCCTTATTCGTATGCCAATGGTTCTCCAAGTG
GCTTACCGGTAACTATGGCCAACAAAATTGGACTGCCTCCGTTTTTTTGT
CACAATGCTGATCCGTTATCAACACCACCACCAGCGCATTGCGGAATACC
TCCATATCAACTGGATCCTAAGATGGGCTTAACTCGACCAGCGCTATACC
CATTTGCGGGAGGTCAATATCCTTACCCAATGCTAAGTTCAGATATGTCT
CAAGTGGCATCATGGCACACTCCTTCTGTTTATTCTGCATCTAGTTTTAG
AACTCCTTATCCCTCCTCACTACCAATAAATACTACACTTGCAAGTGATT
TTCCATTCCGTTTTTCACCTAGCCTTTTACCTTCAGTACATGCCACATCG
CACCACGTTATAAATGCTCATTCTGCTATTGTGGGGGTTAGCTCTAAACA
AGAATGCGGTGTTCAGGACCCAACACGAATAATAGATATCCAAGGAACCT
GGAAGCAAAGCACACATCAAATGCGCAATCAAATGAATCCAAGGAGACAA
CAAATGATAAAAAAAACCCCATATTAAGAAGCCACTAAATGCGTTCATGC
TCTATATGAAGGAAATGCGTGCTAGGTTGTTGCTGAATGCACTCTGAAGG
ATCGGCTGCGATTAATCAGATTTTAGGAAGACGTTGCACGAACTTCCCGC
GAGACAAAGCAAATATACGAAAAGCTCGACAAAGAGCGCCATTGCATATT
GATTTTATCCGGGTGGAGCGCACGAAATAACTATGTACCGGTCAAAAAGA
AAAGCGAAAAAGAACGATCGACAACGATCGGAGCAATAATATGAAAAATG
CGGCGTTCGACT
FMO08275.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:54:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pan-RS | 3101 | CG34403-RS | 697..1809 | 8..1098 | 4860 | 97.1 | Plus |
| pan-RR | 8472 | CG34403-RR | 438..1550 | 8..1098 | 4860 | 97.1 | Plus |
| pan-RA | 4129 | CG34403-RA | 306..1418 | 8..1098 | 4860 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:54:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 72429..72595 | 8..174 | 835 | 100 | Plus |
| 4 | 1348131 | 4 | 94421..94614 | 743..933 | 820 | 98.5 | Plus |
| 4 | 1348131 | 4 | 87015..87167 | 594..745 | 715 | 99.3 | Plus |
| 4 | 1348131 | 4 | 82637..82747 | 317..427 | 540 | 99.1 | Plus |
| 4 | 1348131 | 4 | 75068..75166 | 220..318 | 495 | 100 | Plus |
| 4 | 1348131 | 4 | 85711..85800 | 426..515 | 450 | 100 | Plus |
| 4 | 1348131 | 4 | 85852..85933 | 514..595 | 410 | 100 | Plus |
| 4 | 1348131 | 4 | 72815..72867 | 172..224 | 250 | 98.1 | Plus |
Blast to na_te.dros performed 2014-11-28 21:54:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 1473..1556 | 754..839 | 119 | 61.6 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 2926..3009 | 754..839 | 119 | 61.6 | Plus |
| TART-A | 13424 | TART-A 13424bp | 4249..4333 | 754..840 | 115 | 60.9 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 3682..3758 | 754..832 | 111 | 62 | Plus |
FMO08275.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:41:57 Download gff for
FMO08275.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pan-RB | 420..1544 | 8..1109 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:49:17 Download gff for
FMO08275.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pan-RA | 306..1430 | 8..1109 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:36:44 Download gff for
FMO08275.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pan-RA | 306..1430 | 8..1109 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:36:44 Download gff for
FMO08275.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 94423..94615 | 745..933 | 97 | -> | Plus |
| 4 | 72429..72594 | 8..173 | 100 | -> | Plus |
| 4 | 72817..72862 | 174..219 | 100 | -> | Plus |
| 4 | 75068..75165 | 220..317 | 100 | -> | Plus |
| 4 | 82638..82746 | 318..426 | 99 | -> | Plus |
| 4 | 85712..85799 | 427..514 | 100 | -> | Plus |
| 4 | 85853..85933 | 515..595 | 100 | -> | Plus |
| 4 | 87017..87166 | 596..744 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:49:17 Download gff for
FMO08275.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 93055..93220 | 8..173 | 100 | -> | Plus |
| arm_4 | 93443..93488 | 174..219 | 100 | -> | Plus |
| arm_4 | 95694..95791 | 220..317 | 100 | -> | Plus |
| arm_4 | 103264..103372 | 318..426 | 99 | -> | Plus |
| arm_4 | 106338..106425 | 427..514 | 100 | -> | Plus |
| arm_4 | 106479..106559 | 515..595 | 100 | -> | Plus |
| arm_4 | 107643..107792 | 596..744 | 99 | -> | Plus |
| arm_4 | 115049..115241 | 745..933 | 97 | -> | Plus |
