FMO08276.5prime Sequence
1094 bp (1004 high quality bases) assembled on 2010-03-11
> FMO08276.5prime
CAGTCGACATGCCATCCGTGAAATCCGCCGAAAGTGAGATTCTTCTTGGG
ATTATAAGGAGCGACAGCATGACGAGCGGCAATTCCCTGAGGTCCTGCCT
CCTGCTGGCCACCATCCTGGGATTACTCTGCCGGACGAAGGCTTTGCCCT
TTGAGTATTTAGACGAGCACGAGGACTTCAACTACGACCTGGACACGGCG
CAGTCCCAGGCCAAGTACGACGCCCGTCTGCTCTCGCAGCAGATGCTCAG
CGATGCAGAGCTGCAGCGGCAGGGGCTGAGCGACGGCCAGGACAACGCCC
TGGATGGCGACTCCGCGGCAGCTCAGGGGACTGGAGCAGGGTCCCACTTG
GATGCGGTATCCTCTGTCCACGACGACCTGGAGCCGCACAGCAGGGCAGC
GGCGTGCTTCACCAACGGGCACAAGTACACGCACGGACAGAAGGTTCCGC
GCCTGGATGCCTGCGAGGTGTGTCTCTGCATGGACGGCGAGATCTTCTGC
TGGTGGGAGAAGTGCGATAAGGCCAATGTAAACAAGGCGAGGACGGCGGG
GGACAACGCAGGACTTGGACTTGGTGTCGAGGACGACGGCGACGGCAATG
GCAATGGCGATGGCGATGGTGACTATTCAGATCCATATCGCCACGAGAGC
ACAACGGGAAAGTCAACAAAAGTGCATAAAGCGGCGAGGAAAGTTGGCAA
GCGGCATAAGCATCGCAAGAATCAAAAGAATTTTAATGACTACGAAGTTT
ACCACAGCCAGCGGGAGAAGCAGCAGCAGCAGCAGTCGGATTATAAAAAG
TCCGCCATAAAGCAGCAGCTCCAGATGCAGCAAAAACACAAAAGCGACAG
AGCGGTGCTGGCACTACATATATCAAGCACACAACACGAGCAGCAGCAGC
AGCAGCTCAAATACCGCAGCAGCTACATCAGCAACAGCAGCAACAGAATG
TGGCAGCTTTGGGTGTTATCACGCAGCAAAGCAACGCATTATCAGCAGGC
AGCTTCGATCCCCTGCACTCCCCACCCCCGTCGGAGACACCGAAGACAGC
CCCACCCAACAAGGGCACTCGTCCAGTAATCCTCCTCCGAACTG
FMO08276.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:17:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15236-RA | 4817 | CG15236-RA | 727..1791 | 9..1058 | 4885 | 98.2 | Plus |
| CG15236-RB | 4758 | CG15236-RB | 668..1732 | 9..1058 | 4885 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:17:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6833754..6834255 | 516..1008 | 2060 | 98.2 | Plus |
| 2R | 25286936 | 2R | 6832629..6832933 | 141..445 | 1525 | 100 | Plus |
| 2R | 25286936 | 2R | 6829916..6830048 | 9..141 | 665 | 100 | Plus |
| 2R | 25286936 | 2R | 6833613..6833687 | 442..516 | 375 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:17:54 has no hits.
FMO08276.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:41:59 Download gff for
FMO08276.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15236-RA | 527..1631 | 1..1087 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:30:51 Download gff for
FMO08276.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15236-RB | 661..1765 | 1..1087 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:58:10 Download gff for
FMO08276.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15236-RB | 661..1765 | 1..1087 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:58:10 Download gff for
FMO08276.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6829909..6830048 | 1..141 | 97 | -> | Plus |
| 2R | 6832630..6832931 | 142..443 | 100 | -> | Plus |
| 2R | 6833615..6833687 | 444..516 | 100 | -> | Plus |
| 2R | 6833755..6834344 | 517..1087 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:30:51 Download gff for
FMO08276.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2717414..2717553 | 1..141 | 97 | -> | Plus |
| arm_2R | 2720135..2720436 | 142..443 | 100 | -> | Plus |
| arm_2R | 2721120..2721192 | 444..516 | 100 | -> | Plus |
| arm_2R | 2721260..2721849 | 517..1087 | 95 | | Plus |
