FMO08277.5prime Sequence
1071 bp (983 high quality bases) assembled on 2010-03-11
> FMO08277.5prime
CAGTCGACATGTTACACGAGGCTCTGATGCTCGAGATCTACAGACAGGCG
CTAAATGCCGGAGCTCTGCCCACAGCTCGACCACGTTCCACTGAGTCGGC
GAATTCCAGCGAGCGGTGTCCGTCACACGACTCAAACTCCTCGGAACATG
GTGGTGGTGCTGGCAGCGGCGGAGTAGGTCATCGGTTGGACGCAGCCGCT
CTATCAACCGGGGTGATGCCCGGAGAAGGGCCCACCACTCTGCACTCATC
ATTTCCAGCAGTTCCGCAGTCCCTGCCCTCCCAGCCGCCCTCAATGGAGG
CGTACCTGCACATGGTGGCAGCAGCCGCTCAGCAGTATGGATTCCCTTTG
GCCGCTGCTGCAGCGGCTGGGGCGGGTCCACGGCTGCCACTCCCACTCGC
TAATGAGGCGGCGGCTCCATTTAAGCTTCCCCCACAGGCTTCGCCCACTG
CATCGAGTAATAACTCGGAGGCTCTAGACTTTCGCACCAATCTTTATGGA
AGGGCGGAATCGGCTGAGCCACCTGCCTCTGAGGGCGAGGAGGAGGAATT
CGATGACGGTGCCAACAATCCACTCGATCTCTCTGTAGGTACCCGGAAAC
GGGGTCACGAATCGGAGCCTCAACTTGGTCACATTCAGGTTAAGAAGATG
TTCAAGTCAGACAGCCCACCCGCGAATTCCGTGGCTTCACCCTCAGCCAG
TCAACTGTTGCCAGGAGTTAATCCTTATCTTGCCGCTGTGGCAGCCGCCA
ATATTTTTCGAGCGGGTCAATTCCCTGACTGGAATAGCAAAAATGATTTG
GTTGTGGATCCGCTGGAAAGATGTCTGATATTGTAAAGGGTGGAGCGAGT
GATGGGTACCAAGGAAAAATGCACTCCTCAAGGCCACACACCACAGGCAG
CATCTCAGCCGCCAAAAGTCCGTTCAACCAACACCCAACAAATTCGAATC
CGGAGAGGTCCGAGGCGTGCTGCTGTATTGCGCATGACAAGCGAGCATAC
ATTTGCATTCGACTGCAAAACAGGGTGTGGCCAGTTCTGTTCCATGTGTG
TGGTGCAACGAGTTCCTACTT
FMO08277.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:18:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tsh-RA | 4732 | CG1374-RA | 1214..2292 | 9..1058 | 4665 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:17:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 21833370..21834256 | 61..939 | 4070 | 99.1 | Plus |
| 2L | 23513712 | 2L | 21829806..21829858 | 9..61 | 265 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:17:59 has no hits.
FMO08277.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:42:00 Download gff for
FMO08277.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tsh-RA | 1212..2150 | 9..939 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:30:53 Download gff for
FMO08277.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tsh-RA | 1214..2152 | 9..939 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:58:12 Download gff for
FMO08277.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tsh-RA | 1214..2152 | 9..939 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:58:12 Download gff for
FMO08277.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 21829806..21829858 | 9..61 | 100 | -> | Plus |
| 2L | 21833371..21834256 | 62..939 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:30:53 Download gff for
FMO08277.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 21829806..21829858 | 9..61 | 100 | -> | Plus |
| arm_2L | 21833371..21834256 | 62..939 | 99 | == | Plus |
