FMO08279.5prime Sequence
1103 bp (981 high quality bases) assembled on 2010-03-11
> FMO08279.5prime
CAGTCGACATGTCGCAGCATTTCACATCGATATTTGAGAACCTGCGATTC
GTGACCATCAAACGTTCGACAAATGCGCAACAGCAACAGCAGCAGCAGCA
ACAGCAACTGCAGCAGCAGCAGCAGCAGCTGCAGCAACAGAAGGCACAGA
CACAGCAACAAAATAGCAGAAAAATCAAAACTCAAGCAACGCCAACGTTG
AATGGCAATGGGCTCTTGAGCGGCAATCCAAATGGCGGAGGCGGTGACTC
CTCGCCCAGCCATGAAGTGGACCATCCGGGTGGAGCACAAGGAGCTCAAG
CAGCAGGAGGCTTGCCATCTTCAAGTGGCACGCCATTGAGGCACCACAAG
CGCGCCAGTATCTCCACAGCATCGCCTCCAATCCGCGAACGGCGTGGCAC
CAACACCAGCATCGTGGTCGAACTGGATGGCAGTGGCAGCGGGAGTGGGA
GTGGCGGTGGTGGCGTTGGCGTTGGTCAGGGTGCGGGTTGTCCTCCCTCG
GGCAGCTGCACTGCGTCCGGAAAAAGTTCGCGGGAACTATCGCCGTCGCC
GAAAAACCAACAGCAGCCCAGAAAGATGTCACAGGATTATCGGTCGCGTG
CCGGCAGTTTTATGCACCTGGACGACGAGGGACGCAGTCTGCTGATGCGC
AAGCCGATGAGACTGAAGAACATCGAGGGCAGGCCGGAGGTCTACGACAC
GCTGCACTGCAAGGGTCGCGAGATTCTTTCCTGCTCGAAGGCCACCTGTA
CGAGCAGCATTATGAACATTGGCAATGCGGCGGTGGAGGCCAGGAAATCC
GATCTGATCCTCGAACACGCCAAGGACTTCCTCGAGCAGTACTTTACATC
GATAAAGCGTACATCATCTACCGCCACGAGACGCGATGGAAACAGTGCGC
CAGAGCATTGAGACCACTGGACATTATCAGCTAACCGAACGGACTAATTA
TGGTGCAATGGCCTGCGCAATCTCCCGTGCATGGGCGAATACATGGTCGA
GTGGCAGCTTGACTGTCGGATGTGGCACCACAGGGTCGGTTGAGGCATTT
GCAATACTAAAGCACAATATAGGGAACTGGAATCGCCTACCGATTTTCAA
CGC
FMO08279.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:54:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nos-RA | 4696 | CG6713-RA | 402..1436 | 9..1024 | 4675 | 97.9 | Plus |
| Nos-RF | 4805 | CG6713-RF | 402..1436 | 9..1024 | 4675 | 97.9 | Plus |
| Nos-RK | 4000 | CG6713-RK | 416..740 | 719..1024 | 1125 | 93.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:54:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10831329..10831927 | 607..9 | 2995 | 100 | Minus |
| 2L | 23513712 | 2L | 10825949..10826087 | 859..721 | 695 | 100 | Minus |
| 2L | 23513712 | 2L | 10830600..10830718 | 722..604 | 595 | 100 | Minus |
| 2L | 23513712 | 2L | 10825755..10825837 | 939..859 | 315 | 97.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:54:53 has no hits.
FMO08279.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:42:03 Download gff for
FMO08279.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nos-RB | 505..1465 | 1..956 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:49:26 Download gff for
FMO08279.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nos-RF | 394..1354 | 1..956 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:36:56 Download gff for
FMO08279.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nos-RF | 394..1354 | 1..956 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:36:56 Download gff for
FMO08279.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10825755..10825836 | 860..939 | 97 | <- | Minus |
| 2L | 10825949..10826085 | 723..859 | 100 | <- | Minus |
| 2L | 10830600..10830714 | 608..722 | 100 | <- | Minus |
| 2L | 10831329..10831935 | 1..607 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:49:26 Download gff for
FMO08279.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10825755..10825836 | 860..939 | 97 | <- | Minus |
| arm_2L | 10825949..10826085 | 723..859 | 100 | <- | Minus |
| arm_2L | 10830600..10830714 | 608..722 | 100 | <- | Minus |
| arm_2L | 10831329..10831935 | 1..607 | 99 | | Minus |
