FMO08281.5prime Sequence
1109 bp (999 high quality bases) assembled on 2010-03-11
> FMO08281.5prime
CAGTCGACATGGCGCAACCGCCGCCAGATCAAAACTTTTACCATCATCCG
CTGCCCCACACGCACACACATCCGCATCCGCACTCCCATCCGCATCCGCA
CTCGCATCCGCACCCACATCACCAACATCCGCAGCTTCAGTTGCCGCCAC
AATTCCGAAATCCCTTCGATTTGCTTTTCGATGAGCGAACGGGAGCGATA
AACTACAACTACATACGTCCGTATCTGCCCAACCAGATGCCCAAGCCAGA
TGTCTTTCCCTCAGAGGAGCTGCCCGACTCTCTGGTGATGCGGCGACCAC
GTCGCACCCGCACCACTTTTACCAGCTCTCAAATAGCAGAGCTGGAGCAG
CACTTTCTGCAGGGACGATACCTCACAGCCCCCCGACTTGCGGATCTGTC
AGCGAAACTAGCCCTGGGCACAGCCCAGGTGAAGATATGGTTTAAGAACC
GTCGGCGTCGTCACAAGATCCAATCGGATCAGCACAAGGACCAGTCCTAC
GAGGGGATGCCTCTCTCGCCGGGTATGAAACAGAGCGATGGCGATCCCCC
CAGCTTGCAGACTCTTAGCTTGGGTGGAGGAGCCACGCCCAACGCTTTGA
CTCCGTCACCCACGCCCTCAACGCCCACTGCACACATGACGGAGCACTAC
AGCGAGTCATTCAACGCCTACTACAACTACAATGGAGGCCACAATCACGC
CCAGGCCAATCGTCACATGCACATGCAGTATCCTTCCGGAGGGGGGCCAG
GACCTGGTCGACCAATGTCAATGGCGGCCAGTTCTTCCAGCAGCAGCAGG
TCCATAATCACCAGCAGCAACTGCACCACCAGGGCAACCACGTGCCGCAC
CAGATGCAGCAGCAGCAACAGCAGGCTCAGCAGCAGCAATACCATCACTT
TGACTTCCAGCAAAGCAAGCCAGCGCCTGTCGCGTCCTGGTCAAGGACGA
ACCGGAAGCGACTACAACTTCAACAGCTCGTACTAAATGCGATCGGGAAT
GTCTGGCGCCACTGCATCGGCATCCGCTGGGACCGAGGCGCTGCTCGCCG
GTTCGAGTCTACCAACATTAACACCAAATGACAAAGTCCGAGTTGGGTGG
TATCGCATC
FMO08281.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:27:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bcd-RG | 2514 | CG1034-RG | 196..1306 | 9..1105 | 5105 | 98 | Plus |
| bcd-RE | 2536 | CG1034-RE | 196..1328 | 9..1105 | 4875 | 96.1 | Plus |
| bcd-RD | 2499 | CG1034-RD | 196..1291 | 9..1105 | 4870 | 96.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:26:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6757633..6758434 | 1044..247 | 3765 | 99.1 | Minus |
| 3L | 28110227 | 3L | 27540974..27541642 | 247..914 | 3235 | 99.3 | Plus |
| 3L | 28110227 | 3L | 27850063..27850731 | 247..914 | 3235 | 99.3 | Plus |
| 3R | 32079331 | 3R | 6759107..6759271 | 173..9 | 825 | 100 | Minus |
| 3L | 28110227 | 3L | 27540137..27540298 | 9..170 | 780 | 98.8 | Plus |
| 3L | 28110227 | 3L | 27849226..27849387 | 9..170 | 780 | 98.8 | Plus |
| 3R | 32079331 | 3R | 6758472..6758548 | 249..173 | 385 | 100 | Minus |
| 3L | 28110227 | 3L | 27849949..27850025 | 173..249 | 385 | 100 | Plus |
| 3L | 28110227 | 3L | 27540860..27540936 | 173..249 | 385 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 23:27:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6812..7013 | 788..983 | 274 | 63.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6849 | 788..897 | 233 | 69.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6776..6888 | 788..897 | 233 | 69.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6755..6868 | 788..898 | 221 | 70.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6797..6916 | 788..913 | 220 | 66.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1040..1196 | 763..914 | 195 | 62.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2343..2529 | 788..977 | 186 | 60.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2367..2473 | 788..897 | 183 | 64.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6839..6922 | 788..874 | 175 | 70.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2409..2533 | 788..912 | 166 | 59.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2840..2947 | 787..897 | 151 | 62.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2454..2551 | 788..890 | 144 | 63.5 | Plus |
FMO08281.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:31:31 Download gff for
FMO08281.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bcd-RG | 207..1268 | 9..1062 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:24:01 Download gff for
FMO08281.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bcd-RG | 196..1257 | 9..1062 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:12:24 Download gff for
FMO08281.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bcd-RG | 196..1257 | 9..1062 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:12:24 Download gff for
FMO08281.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6757601..6758431 | 250..1071 | 98 | <- | Minus |
| 3R | 6758472..6758547 | 174..249 | 100 | <- | Minus |
| 3R | 6759107..6759271 | 9..173 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:24:01 Download gff for
FMO08281.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2584829..2584993 | 9..173 | 100 | | Minus |
| arm_3R | 2583323..2584153 | 250..1071 | 98 | <- | Minus |
| arm_3R | 2584194..2584269 | 174..249 | 100 | <- | Minus |
