FMO08282.5prime Sequence
1096 bp (965 high quality bases) assembled on 2010-03-11
> FMO08282.5prime
CAGTCGACATGAGAGATTGGCAAACATTCCCGGACCTCCAAAAAAAGAAA
GTTTCGCGTGACCATTTAAATTGCCCTGCAACAATGGCAGGTTCAAACGT
TTTGTGGCCAATACTCCTGGCCGTGGTGCTGCTCCAAATATCCGTGGCAT
TCGTGAGTGGAGCGGCCAGTGGTGGGGTAGTCCTTAGCGACGTGAACAAC
ATGTTGCGCGATGCCAAGGTGGTGACCTCGGAGAAACCCGTTGTGCACTC
AAAACAGGAAACGGAAGCGCCGGAATCCAGCGTGGAGCTGCTCCGCTTCG
TCGATGATGACGAGGATAGCGAGGACATCAGCTCCATTGAACGGCAGGAT
GGCAGGACAATGGAGAGCAAAAAAATGGCCGATCAGGTGCGCCTGTTGAC
CAAGCAGCTCAACGCCCTGATGCTGCGGCGCCGCGAGGATTACGAGATGC
TGGAGCACAATCTGCGCAAATCCCTGCGGCTCACCACGAATGCGAACAGC
GTGGACGCCGACATGCGCAGCGAACTGAACCAACTCAGGGAGGAGCTGGC
CGCGCTGCGCTCCTCGCAGAGTGGCAACAAGGAGCGCTTGACCGTCGAGT
GGCTGCAGCAGACGATCTCCGAGATCCGCAAACAGCTGGTGGATCTGCAA
AGGACGGCCAGCAACGTGGCCCAGGATGTCCAGCAGCGCAGCTCCACCTT
TGAGGATCTGGCCACCATTCGCAGTGACTATCAGCAGCTTAAGCTAGATC
TGGCCGCTCAGCGCGAGCGCCAGCAGCAGACGGAGGTCTACGTCCAGGAA
CTGCGCGAGGAGATGCTCCAGCAGGAGCAGGACTTCCAGCATGCCCTCGT
CAAGCTGCAGCAGAGGACTCGCAAGGACGGCTCATCCGCCAGTGTGAGGA
GGGGAGCGTTAGCCAGGAAGCCAACCAGGAGCAAACCGGACTTGAAACCA
TTGCTGATCACAGCGAGGCATTGCCGTTTTCAGACGAACAGATTCACAGC
TGCAACTGGCCAAGAACTTGCGCGACAGGTGAACGAATTGCCTTCCCACT
CTACAACGGTTCCACATCAGGGGACACAGATTGCATGCACTTTATT
FMO08282.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:03:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sca-RB | 3796 | CG17579-RB | 323..1370 | 9..1046 | 4890 | 98.3 | Plus |
| sca-RA | 2876 | CG17579-RA | 323..1370 | 9..1046 | 4890 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:03:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12780863..12781393 | 9..539 | 2655 | 100 | Plus |
| 2R | 25286936 | 2R | 12784345..12784742 | 535..931 | 1910 | 99.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:03:17 has no hits.
FMO08282.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:41:54 Download gff for
FMO08282.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sca-RB | 312..1373 | 1..1055 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:20:22 Download gff for
FMO08282.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sca-RA | 315..1376 | 1..1055 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:38:05 Download gff for
FMO08282.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sca-RA | 315..1376 | 1..1055 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:38:05 Download gff for
FMO08282.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12780855..12781392 | 1..538 | 99 | -> | Plus |
| 2R | 12784349..12784742 | 539..931 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:20:22 Download gff for
FMO08282.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8668360..8668897 | 1..538 | 99 | -> | Plus |
| arm_2R | 8671854..8672247 | 539..931 | 99 | -> | Plus |
