FMO08283.5prime Sequence
1052 bp (923 high quality bases) assembled on 2010-03-11
> FMO08283.5prime
CAGTCGACATGACGATGGCAGAAGGCACCGACCCCATGGGGCATGGTCAC
CACACGAATCCGCACAATCCGCCCCAGCAGCCGCCGCAGCACCATCCGCA
CCACCTGCCCCTGCCCCATCCCCCGCCGGCACCACCGCCGCAGCTACTCA
ATTTCAATCACCACCAGCAGCAGTATCTTCCCCACATGTATCCTGCGGCA
GCGGCAGCGGCACAATCTCACTCCCACTACGGTGGCCTGCAGTATCCCCA
TCCACATGCGCTGCAGCATCAGCATCATCCCCACCAGCACCAGCATCACT
TGCCGCTGGCCTTGAGCCTCCATCAGCAGGCGGCTGCGGCGGCGGCAGTG
GCTGCAGCGGTGGCCACTAACCACTCCAACAATAACAATCAGGCCAGCGT
GGCCAACAATAATATAGTGGTTCCATGGAAGCAGCGCAAGCGCAAGAGGC
TCTCAGCGGTGCTGGACAAGCTGCACCACAATAATAATAATAATAATAAC
AACAATAATGAGACCCACTCCAATGGCATGGCCTGCAAGGCGGAACCGAT
GGAAATGAAGGGAGATCTAGCCGAAGATGCCGAACAGGATGAAGATCATG
ATGGGTCCGTGCCTGATGAGGAAGATGATTCCGTAGATCAGGATGGTGAT
GCTGGCAAGTACATCAAGAGCGAGCAGCCCGTCAGCGAGGACGAGGAGAA
CGAACAGGAAATGGACCAAGATATCGAGGACATTTCCGGCGAGGATCTCG
AGCTGTCGCACAGCGATGATAATGACCAGGACGACAGCCCCAGGATCAGT
ATGAGTCCTCTGCAGCTGCAGGCCGCCCAGAGCAATCTGCCCAAGATCAG
ACCAGCGATGAACAAGAGAATCCGCTTCATGTGACATCAAGACTGAGATC
CCAGCCCTTATGATAGGTATTTCCTAATACCATCTCTCTGTTCGGCTATT
ACTGCACACCAATATCTGATGGAGGTATCGGCGGGTCATGATCTCTATCC
TCGCCTGCAGACATCAATCTTCTAGCCTCGAACGGAACTACCAATGTCAG
AG
FMO08283.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:08:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| klu-RD | 4792 | CG12296-RD | 1061..2072 | 8..1006 | 4625 | 97.9 | Plus |
| klu-RC | 4437 | CG12296-RC | 706..1717 | 8..1006 | 4625 | 97.9 | Plus |
| klu-RB | 3870 | CG12296-RB | 706..1717 | 8..1006 | 4625 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:08:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 10983923..10984902 | 978..8 | 4345 | 98.4 | Minus |
Blast to na_te.dros performed 2014-11-28 22:08:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Stalker | 7256 | Stalker STALKER 7256bp | 2709..2870 | 339..495 | 141 | 58.8 | Plus |
| Stalker4 | 7359 | Stalker4 STALKER4 7359bp | 2815..2976 | 339..495 | 132 | 58.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2346..2521 | 240..414 | 121 | 55.3 | Plus |
FMO08283.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:41:55 Download gff for
FMO08283.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| klu-RA | 697..1716 | 8..1016 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:44:57 Download gff for
FMO08283.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| klu-RA | 706..1725 | 8..1016 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:00:17 Download gff for
FMO08283.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| klu-RB | 706..1725 | 8..1016 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:00:17 Download gff for
FMO08283.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 10983881..10984902 | 8..1016 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:44:57 Download gff for
FMO08283.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 10976981..10978002 | 8..1016 | 97 | | Minus |
