FMO08285.5prime Sequence
1109 bp (945 high quality bases) assembled on 2010-03-11
> FMO08285.5prime
CAGTCGACATGTTGTGCTTCGACTCGGAGAGGATGAACTGGTACTACCAC
GTCCTGGCCAGGCGTCCCTACCTGGTGGTCGTCTCCATTGCTGTCTACTG
TGTCGCTTGCATCATCGTGGCCCTCGTCCTGAACAAGCTGCCGGACTTCA
GTGATCCCACCTTGGGCTTCGAAACCCGCGGCACCAAAATTGGAGAACGA
CTGACGGCCTGGTACAACCTGCTGCAAGAGACTGACCACCATGGTGCTCT
TTTCTCAAATCCATCGGATCTGTGGGAGAGGAGACGGGTAGAGCAGGGCT
ATGTGGAGACGAAGCTGCATCCGAATCACAGGCGACGCAAAAACAAGCAC
AAGAACAGAAACAAGAACAATCGACGCAAGGAACAAAATCAAAGCAGCCA
CGAGCATCACGATGTGGCGCAGAAGATGATGCAGTTCAAAAAACGGCTGA
AGGCTACTAGTTCTCCCTCTCCAAATCTCGGCTTTGACACCTGGATCGGG
GACAGTGGAGTATTTCGCGACTACGAGATTACAAACGACAGCGCTTCCTC
CTCTTTGGAACCCACGCGACGCACTGAGCAAATCGAATATGGCCACAACA
CCACCTCAGTGGACGAGGAAGAGCATCAGCAGCGGGTGCAGACCAAGAAG
AGCACTTGGCGGCTCCTAAAGCAAGCCGCCACCTTGCCCACCGACGGTTG
GGCAGACATGCATCGTCGCCAACCCATCGAGGGATTCTTTTGCGATTCAT
CGCCCCGGAAGGAGTACTCTCATTTTGTGGTCCAGCGGATCGGTCCCAAC
GCCACCGATTCTCTATTTGATTTGAACGGACTGCTGGCCATGTGTCAGTT
GCAGGATCAGATTACCGAAGTCCCCAGCTACCGGGCATTTTGCGAGCCGG
AAGATGCTTACTACCGAGTGCTGCCGGCCATGGTCACTGCCCAACTACGC
GGCATGCTGGCAACAAAGTTCCTGTTCGACTTACCACGGAGGATGTTTAC
TTCGCTGCACACGCCTGCTCTGGCTGCTATGAATACTTCATGACTAGAAT
GGACAACCCCTGCAACGAATATCCGCATTGTCTGCTTCTGAAATGCAAGC
GGCTAAATT
FMO08285.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:09:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| disp-RA | 4884 | CG2019-RA | 401..1513 | 6..1108 | 5040 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:09:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5854427..5855352 | 1082..164 | 3905 | 97.2 | Minus |
| 3R | 32079331 | 3R | 5855752..5855911 | 165..6 | 800 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:09:24 has no hits.
FMO08285.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:31:35 Download gff for
FMO08285.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| disp-RA | 396..1513 | 1..1109 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:39:57 Download gff for
FMO08285.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| disp-RA | 396..1513 | 1..1109 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:00:41 Download gff for
FMO08285.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| disp-RA | 396..1513 | 1..1109 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:00:41 Download gff for
FMO08285.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5854396..5855351 | 165..1109 | 97 | <- | Minus |
| 3R | 5855753..5855913 | 1..164 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:39:57 Download gff for
FMO08285.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1680118..1681073 | 165..1109 | 97 | <- | Minus |
| arm_3R | 1681475..1681635 | 1..164 | 98 | | Minus |
