Clone FMO08287 Report

Search the DGRC for FMO08287

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:82
Well:87
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG15800-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO08287.5prime Sequence

497 bp (497 high quality bases) assembled on 2010-03-11

> FMO08287.5prime
CAGTCGACATGGTGCGATTCGAGACAAGGGACGGCCGTACGATAAGCGTA
AATCTGGCTCTGCTCGAGAAATCCTTGGTGATCCGGGAGATGTGCCGCGT
TGGCCAGGTCCCAGAGGATGAGGACTTCGTCCTGCCGCTGCACGGTATAC
ACAGCAATGTCCTGCTGAAGATCTTGCTGTGGGCTGAGTACCATGAGAAA
CACGAAGAGCCCGCCTGGGTGGACAGCAAAGATCCTCTTCCGGCCGAGGA
GATTGAGCTGCAGATCTCCGATTGGGACAAGGAGTTCCTGCGCGTGGAAA
TCGATAGCATTTGCAAAATCATGGAGGGCTGCAACTACTTGGACATCCCT
TGGCTCTACAAGCTCTGTGCCCAGAAACTCGTCTTCCTCAGCAGCCGAGA
GCCGGAGACGCAGTTCAGCGGTTACGTGGAGAAGATCCCAAGATTCCAGG
ATCATTTCATTGAGCAAATTCAAAAGGAAGCAAGCTTTCTAGACCAT

FMO08287.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:12:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG15800-RA 614 CG15800-RA 36..506 9..479 2340 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:12:08
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23790722..23791192 479..9 2340 99.8 Minus
Blast to na_te.dros performed on 2014-11-28 20:12:09 has no hits.

FMO08287.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:31:36 Download gff for FMO08287.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15800-RA 1..475 9..484 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:30:12 Download gff for FMO08287.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15800-RA 31..506 1..479 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:52:24 Download gff for FMO08287.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15800-RA 31..506 1..479 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:52:24 Download gff for FMO08287.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 23790722..23791197 1..479 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:30:12 Download gff for FMO08287.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19678245..19678720 1..479 98   Minus