FMO08290.5prime Sequence
785 bp (785 high quality bases) assembled on 2010-03-11
> FMO08290.5prime
CAGTCGACATGATACCCTATAATTATAATAGTCCAGACACTGCCAAATAC
GTGAAACGCACCTGGGGAAAACACTGCAATGTTTTGCTATTTGTGAGTGG
GGATATCGATGGCGAGTTGGAACCCTATGTGCCTGTGATTAATTCCACGG
ATACATGGACTTTGGTCCAACAGGGGCTAATGCAGGCCTATCTGTTCTAT
GCCGACCAAATCGATTGGTTCCTTAGAGTCGAGCCCTCTAGTTTTGTAGT
TTTGGAGAATCTCCGGTATATGATACACAAAAGGAAATATCAACCCAGTC
AACCGATATATTTTGGCTACGAGCTCGAGAATATTGTTACCCATGAGTCC
TTTGTCCACCATCATAGTGGGTATGTCATAAGTCGCGAGGCCTTAAAAAG
GTATACGATGGCGTCAAAGGATCCTGACAACAAGGAGTGCACTCATTGGG
AGGGATATGTTGAGGGTCTGGATATACATCGGTGCTTGAGATTTGCTAAT
GTAACGGTAGCAGAGAGTCGGGACGAATTTGAGCACGAGACATTCCTACC
CGTTACAATGGATTACCAGTTCTTAAATGGCTATGATACTATACCCTGGC
TGCGTAAATTAAGTTATCACAAACGTACAGAGAAAACAGTTCCCATATCC
AGCCGCGCCATTTGTTTTCTGGTAGAATATCCGCCAGAAATGTACGATTA
CTACTATTTTGTTTATCGATTGAAAATCTTTGGCACTCCCGTCCGAAACT
CCATAGACTTTAGGCCGGCAAGCTTTCTAGACCAT
FMO08290.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:34:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34451-RC | 1172 | CG34451-RC | 153..912 | 8..767 | 3740 | 99.5 | Plus |
| CG34451-RA | 945 | CG34451-RA | 153..912 | 8..767 | 3740 | 99.5 | Plus |
| CG34451-RB | 1254 | CG34451-RB | 696..1221 | 242..767 | 2570 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:34:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15688975..15689261 | 632..346 | 1375 | 98.6 | Minus |
| 3L | 28110227 | 3L | 15691662..15691895 | 241..8 | 1170 | 100 | Minus |
| 3L | 28110227 | 3L | 15688777..15688913 | 767..631 | 685 | 100 | Minus |
| 3L | 28110227 | 3L | 15689343..15689450 | 347..240 | 540 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:34:46 has no hits.
FMO08290.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:33:19 Download gff for
FMO08290.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34451-RA | 148..915 | 1..771 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:33:29 Download gff for
FMO08290.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34451-RA | 148..915 | 1..771 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:20:18 Download gff for
FMO08290.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34451-RA | 148..915 | 1..771 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:20:18 Download gff for
FMO08290.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15688774..15688911 | 633..771 | 98 | <- | Minus |
| 3L | 15688975..15689259 | 348..632 | 98 | <- | Minus |
| 3L | 15689343..15689448 | 242..347 | 100 | <- | Minus |
| 3L | 15691662..15691900 | 1..241 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:33:29 Download gff for
FMO08290.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15681874..15682011 | 633..771 | 98 | <- | Minus |
| arm_3L | 15682075..15682359 | 348..632 | 98 | <- | Minus |
| arm_3L | 15682443..15682548 | 242..347 | 100 | <- | Minus |
| arm_3L | 15684762..15685000 | 1..241 | 98 | | Minus |
