FMO08291.5prime Sequence
1012 bp (982 high quality bases) assembled on 2010-03-11
> FMO08291.5prime
CAGTCGACATGGCCGCCATTAAGGACAGTCTGTTGGCCCAGGTTGCTGAG
GTCCTGCCCAGCTCCGGGCACAAGGTCACCATTGTGGGCATCGGCCAGGT
GGGCATGGCCAGCGCCTTCAGCATCCTGGCTCAGAACGTCTCCAAGGAGG
TGTGCCTCATCGATGTCTGCGCGGACAAGCTGCAGGGCGAGCTGATGGAT
CTGCAGCACGGCTCCAACTTTCTGAAGAACCCCCAGATCACGGCCAGCAC
CGACTTTGCCGCCTCGGCCAACTCCCGTCTGTGCATCGTGACCGCCGGAG
TGCGCCAAAAGGAGGGCGAGTCCCGCCTGTCCCTCGTGCAGCGCAACACC
GACATCCTCAAGAACATCATCCCCAAGCTGGTAGAGTACAGTCCCGATAC
CATTTTGCTTATGGTGTCCAATCCCGTGGACATCATGACCTACGTGGCCT
GGAAGCTGTCCGGTCTGCCCAAGAACCGCGTGATCGGCAGCGGCACCAAC
TTGGACTCGTCCCGCTTCCGCTTCCTGATGTCGCAGCGCCTGGGCGTGGC
ACCCACCTCCTGCCACGGCTGGATCATCGGTGAGCACGGCGACAGCTCCG
TGCCCGTTTGGTCTGGAGTGAACATTGCCGGCGTGCGTTTGCGCGAGCTG
AACCCCATTCTGGGCACCGGCGAGGATCCAGAGAAGTGGAACGAGCTGCA
CAAGCAGGTGGTGGACTCCGCCTACGAGGTGATCAAGCTAAAGGGATACA
CCTCCTGGGCCATTGGCCTGAGCACCGCCTCCCTGGCCTCGGCCATCTTG
CGCAACACGAGCAGCGTGTCCGCCGTCTCCACCTCCGTTTTGGGCGAACA
TGGCATTGACAGGATGTGTTCCTCTCGCTGCCCTGCGTTCTCAATGCCAC
GGTGTGACATCCGTGGTCAAGCAGATCCTGACTCCCCACGAGTGAACAAC
TGCAGAGTCCGCCAACATCATGTCGATGTCCAGCTGTCTGAAGTTCGCAA
GCTTTCTAGACA
FMO08291.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:12:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ImpL3-RD | 1350 | CG10160-RD | 98..1093 | 9..996 | 4735 | 98.9 | Plus |
| ImpL3-RC | 1324 | CG10160-RC | 72..1067 | 9..996 | 4735 | 98.9 | Plus |
| ImpL3-RB | 1778 | CG10160-RB | 139..1134 | 9..996 | 4735 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:12:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6259980..6260438 | 843..385 | 2280 | 99.8 | Minus |
| 3L | 28110227 | 3L | 6260505..6260882 | 386..9 | 1890 | 100 | Minus |
| 3L | 28110227 | 3L | 6259774..6259911 | 974..842 | 430 | 94.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:12:15 has no hits.
FMO08291.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:33:21 Download gff for
FMO08291.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ImpL3-RA | 138..1136 | 9..1000 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:30:15 Download gff for
FMO08291.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ImpL3-RB | 139..1137 | 9..1000 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:52:27 Download gff for
FMO08291.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ImpL3-RB | 139..1137 | 9..1000 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:52:27 Download gff for
FMO08291.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6259745..6259910 | 843..1000 | 92 | <- | Minus |
| 3L | 6259981..6260436 | 387..842 | 99 | <- | Minus |
| 3L | 6260505..6260886 | 1..386 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:30:15 Download gff for
FMO08291.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6252845..6253010 | 843..1000 | 92 | <- | Minus |
| arm_3L | 6253081..6253536 | 387..842 | 99 | <- | Minus |
| arm_3L | 6253605..6253986 | 1..386 | 98 | | Minus |
