FMO08293.5prime Sequence
1055 bp (908 high quality bases) assembled on 2010-03-11
> FMO08293.5prime
CAGTCGACATGTTAGCTACTCTTTGGATCATATTACTGAGTAGCACCTTC
GGTAAATGCCTCGACAATGGGCTTGCCAAAACTCCTCCAATGGGTTGGCT
TTCCTGGGAGAGATTTCGTTGCAACACGGATTGCGTGAACGATCCAGATA
ATTGCATTAGTGAACAACTATTTCAAACCATGACTGATATTGTTGTGGCG
GATGGATATGCATCTGTGGGCTATGAATACATAAATATCGACGATTGCTG
GTTGGAAAAACATCGCAGTCACGATGGAAAATTGGTAGCTGATCGCAAAC
GTTTTCCGAACGGCATTAAAGCTTTGTCTGATTATATTCACTCGAGAGGC
CTCAAGTTTGGAATTTACGAGGACTACGGCAACTACACCTGCGCCGGATA
TCCGGGCATTATTGGTTATGAGGAGAAGGATGCCCTTCAATTCGCGGACT
GGAATGTGGACTACGTGAAGCTAGATGGTTGCTATGCTCTGCCCTACGAT
ATGGATCATGGCTACTCCACTTTCGGTCGACTTCTGAACAGCACGGGCAA
ATCGATGGTGTATTCCTGCAGCTGGCCAGTTTATCAGATTTATGCGGGAA
TACAGCCAAACTACTCGGCCATCCAAACGCACTGCAACCTGTGGAGGAAC
TATGACGACATCCAGGACTCGTGGGCATCCGTGGAGAATATAATCGATTA
TTATGGCAACAACCAGGACGTAATAGCGCCCAACGCACGTCCTGTCATTG
GAACGATCCAGATATGTTGATTATCGGAAATTTCGGACTGAGTTACGAGC
AAGCTAAAACCCAATTCGCAATTTGGTCAATTTTGGCCGCTCCACTTTTG
ATGTCGGTTGATTTGAAACGATTCGTCCGCAGTTTAAACACATTCTAAAG
ATCGAAAGATAATCGCGTGATCAGATCCGCTTGGATACAGGAAGAAGATT
TATAACCCAGGCATTGAGATCGGTCAAGACGATTGACGCTCTATACAACT
TTTATATCCCTACCCATTTGCCTTGGAATAAGAGACTGAGGAATCACTCC
GAAAT
FMO08293.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:20:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5731-RA | 1761 | CG5731-RA | 294..1324 | 9..1024 | 4595 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:20:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10207920..10208351 | 766..336 | 2095 | 99.5 | Minus |
| 2L | 23513712 | 2L | 10208408..10208584 | 335..159 | 885 | 100 | Minus |
| 2L | 23513712 | 2L | 10208645..10208796 | 160..9 | 760 | 100 | Minus |
| 2L | 23513712 | 2L | 10207705..10207857 | 916..766 | 650 | 98 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:20:09 has no hits.
FMO08293.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 10:31:39 Download gff for
FMO08293.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5731-RA | 271..1283 | 9..1004 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:59:09 Download gff for
FMO08293.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5731-RA | 294..1306 | 9..1004 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:56:16 Download gff for
FMO08293.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5731-RA | 294..1306 | 9..1004 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:56:16 Download gff for
FMO08293.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10207603..10207856 | 767..1004 | 92 | <- | Minus |
| 2L | 10207920..10208351 | 336..766 | 99 | <- | Minus |
| 2L | 10208408..10208582 | 161..335 | 100 | <- | Minus |
| 2L | 10208645..10208804 | 2..160 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:59:09 Download gff for
FMO08293.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10207603..10207856 | 767..1004 | 92 | <- | Minus |
| arm_2L | 10207920..10208351 | 336..766 | 99 | <- | Minus |
| arm_2L | 10208408..10208582 | 161..335 | 100 | <- | Minus |
| arm_2L | 10208645..10208804 | 2..160 | 97 | | Minus |
