FMO08326.5prime Sequence
578 bp (578 high quality bases) assembled on 2010-06-02
> FMO08326.5prime
CAGTCGACATGTACCAGCTGGAGAAGATCTGGGTCCTGCTGTGCCTGGCC
CTCGTCGGTGTCCTTGGCTTCGGCCAGTTCCACATGAAGCACTATCAGCT
GCAGCGTAACTACAATACGCAGGAGGATTCCGGCGAGAATGACAATAGTG
TGCTGCGAACCTTTCGCCGCTGCATGTGGGAGCAGTCGAAGTTTCTGCCC
CGCCGCCTCGTCCTTTTGAGCCTGTGCTCGAATCTCTTCTGCGAGAACAA
TCACATAATGCCCCGTTCCAGGTCTATTTTCGTAGTGGAAAAAATGTCTA
GGCCGAATGACTGCCTGGACATCCTGCCCGAGCAATGCGAGCAGGGCGAT
GAGGAGGAGCTGATGTACAAGCCCTTCCCCGACTGCTGTCCGGTTTATTG
CAACCTGAAGCGTCGGATGCAGCGCCTGCGCACCATGCACTTCCGGCACC
GCCTGCTGCGCAACAAACAGGACGGCTCAGCGGGATCCGCTGGCGGTGGA
TCCGCTGGTGGCGACGGTCCCAATAACTCGCTCCTCAGTGAGTTTGTCTA
CAACAACTACGCAAGCTTTCTAGACCAT
FMO08326.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:39:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1552-RC | 1060 | CG1552-RC | 68..623 | 5..560 | 2765 | 99.8 | Plus |
| CG1552-RA | 837 | CG1552-RA | 28..583 | 5..560 | 2765 | 99.8 | Plus |
| CG1552-RB | 798 | CG1552-RB | 28..294 | 5..271 | 1320 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:39:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11052608..11052857 | 560..311 | 1250 | 100 | Minus |
| X | 23542271 | X | 11053034..11053187 | 310..157 | 770 | 100 | Minus |
| X | 23542271 | X | 11053337..11053489 | 157..5 | 750 | 99.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:39:44 has no hits.
FMO08326.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:23:15 Download gff for
FMO08326.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1552-RA | 25..583 | 1..560 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:40:39 Download gff for
FMO08326.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1552-RA | 25..583 | 1..560 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:16:30 Download gff for
FMO08326.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1552-RA | 25..583 | 1..560 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:16:30 Download gff for
FMO08326.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11052608..11052857 | 311..560 | 100 | <- | Minus |
| X | 11053034..11053187 | 157..310 | 100 | <- | Minus |
| X | 11053338..11053492 | 1..156 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:40:39 Download gff for
FMO08326.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10946641..10946890 | 311..560 | 100 | <- | Minus |
| arm_X | 10947067..10947220 | 157..310 | 100 | <- | Minus |
| arm_X | 10947371..10947525 | 1..156 | 98 | | Minus |
