Clone FMO08328 Report

Search the DGRC for FMO08328

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:83
Well:28
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG13689-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO08328.5prime Sequence

425 bp (425 high quality bases) assembled on 2010-06-02

> FMO08328.5prime
CAGTCGACATGGAGGATTGGAAATCGGAGGAAATGGCAAGGAAAAGAAAC
AGGAATAGGAGCAAGCAGCGCAGACGAAGGCAGAAAAGTGAGGGAAAGCC
GAAGCCACATACATCTCGAGATCAGTGGAGCAATGTGGCTCAAATATACC
AAAGCCTTTTTGAATGGCACCACAATCATGTTATGAGTCTCTGCCCTGAG
GTTAATCCGAATCTGGATCAGGACCTTGAGGATATTCCCAAGGAAACAGG
AACGTTTCACTGCCTGGACTACGTGTACGAGAGTTCTTCCGAGGATGAGG
AGATCGAACCCATTGACGAAGGCTATCTGAAGTTCCTCGAGGTGACCATT
AAGCATCAGCAGGAACTCAGGGATCGAAGAACTGCCCAAACCACCGACTC
TTTAGATGCAAGCTTTCTAGACCAT

FMO08328.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:59:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG13689-RA 683 CG13689-RA 59..457 9..407 1980 99.7 Plus
CG13689-RB 1494 CG13689-RB 135..400 142..407 1315 99.6 Plus
CG13689-RB 1494 CG13689-RB 59..137 9..87 395 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:59:14
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 603074..603336 145..407 1300 99.6 Plus
2L 23513712 2L 602871..603006 9..144 680 100 Plus
Blast to na_te.dros performed on 2014-11-28 19:59:15 has no hits.

FMO08328.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:23:06 Download gff for FMO08328.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13689-RA 53..457 1..407 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:24:25 Download gff for FMO08328.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13689-RA 53..457 1..407 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:47:46 Download gff for FMO08328.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13689-RA 53..457 1..407 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:47:46 Download gff for FMO08328.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 602865..603006 1..144 97 -> Plus
2L 603074..603336 145..407 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:24:25 Download gff for FMO08328.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 602865..603006 1..144 97 -> Plus
arm_2L 603074..603336 145..407 99   Plus