FMO08329.5prime Sequence
1098 bp (995 high quality bases) assembled on 2010-06-02
> FMO08329.5prime
CCAGTCGACATGGCCAGCACAGCGGTGGGACTGGGAGGCGGCGAAGGTGA
CCCCGGGGCGGGAGGACCGCCAGCGGGATCAGCGCATCCCGACGACGCCA
GCAGCATGAGCGACGACGTCTTCGAGGATGCGGAGACCACCCAGGCCAGG
ATCGAGGAGCTGCGTCGCCGGCCCTTTGGCGATGGCTCCTACAATCCCCC
CGCAGCGCCCGCCTCAGTTTCCGCCTCGATAACGACGACAACGACACAGC
AGCAGCAACAACATCACAATCCTTCGCATCACCACCAATCCTCGCACCAC
CAACCATCCCACCACCATCACCACCACCACCACAGCCAGCTGAGTTTGAC
GGGCAGCCATCACTACCACGACGATGCTATCATGGCGCCCGTTCAGCGCT
CGGCCACCGGATATCCTGGCTATCGTCCCTCCCGCGAGGCAATGCAGATG
TATGCGTACGGAACGGATGACTACGACGATGACTATAACGATGGTTGGCG
ATCGTATCGCTACGATGAAGTGGACATGCACCCAGCCCCGTCCAACGCCC
ATCAGCAGCCCTTCGATGATACGGTTAACCACAAGACGATCCTGCTGGGG
GATTCGGGCGTGGGAAAGACCTCCTTCCTGGTCAAATACAATACGGGCGA
GTTCCGACTGGGTTCCTTTTCCGCCACAGTGGGCATTGCGCTTACGAACA
AAGTGGTGGTCGTCGATGGAACGCGCGTCAAGCTGCAAATCTGGGACACA
GCTGGTCAGGAGCGATTCCGGAGCGTTACCCACGCCTATTATCGCGACGC
GCACGCTCTACTGCTGCTGTACGACGTGACCAACAAGACCACCTATGACA
CATTCGCGCCTGGCTGGGCGAGATCCGGGAGTACGCGCAGGAGGACGTGG
TCATCGTTTTATAGCCACACGCCGACTGCACCGGCACCAACGGCAAGTGA
AGCGGGAGGATGGTGAACCGTTTGGGCGGGAACACACCGGCCCTTCATGA
AACCTCGGCAAGACGGGATCACATTGGGACTTTCCCTTCAACGGTGACCA
CGAATAAAAAAGTCCCGGCTCAAACACGCGATGTATGAAGATTCATTG
FMO08329.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:57:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rab26-RG | 3355 | CG34410-RG | 1172..2188 | 10..1018 | 4675 | 97.9 | Plus |
| Rab26-RB | 2518 | CG34410-RB | 1172..2188 | 10..1018 | 4675 | 97.9 | Plus |
| Rab26-RE | 3311 | CG34410-RE | 1172..1860 | 10..698 | 3445 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:57:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21319945..21320631 | 10..696 | 3435 | 100 | Plus |
| 3L | 28110227 | 3L | 21332602..21332711 | 696..805 | 550 | 100 | Plus |
| 3L | 28110227 | 3L | 21333153..21333260 | 805..911 | 490 | 99.1 | Plus |
Blast to na_te.dros performed 2014-11-28 20:57:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2361..2504 | 200..342 | 186 | 59.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2435..2548 | 226..340 | 184 | 67.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6725..6832 | 239..344 | 165 | 63.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2419..2534 | 231..342 | 164 | 63.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2443 | 200..341 | 161 | 60.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6761..6901 | 200..338 | 159 | 60.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6800..6927 | 200..332 | 159 | 60.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2319..2451 | 239..366 | 156 | 61.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1067..1162 | 247..342 | 156 | 62.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6743..6850 | 236..342 | 150 | 61.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6818..6924 | 236..341 | 145 | 60.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6764..6888 | 236..368 | 142 | 61.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6785..6892 | 236..338 | 140 | 63 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1501..1601 | 238..334 | 135 | 62.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2466..2537 | 236..306 | 132 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1519..1577 | 231..288 | 130 | 71.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2381..2467 | 246..332 | 129 | 60.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1073..1163 | 239..328 | 119 | 60.4 | Plus |
FMO08329.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:23:05 Download gff for
FMO08329.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab26-RB | 1172..2153 | 10..986 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:48:02 Download gff for
FMO08329.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab26-RB | 1172..2153 | 10..986 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:36:07 Download gff for
FMO08329.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab26-RB | 1172..2153 | 10..986 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:36:07 Download gff for
FMO08329.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21333154..21333264 | 806..913 | 97 | -> | Plus |
| 3L | 21319945..21320631 | 10..696 | 100 | -> | Plus |
| 3L | 21332603..21332711 | 697..805 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:48:02 Download gff for
FMO08329.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21313045..21313731 | 10..696 | 100 | -> | Plus |
| arm_3L | 21325703..21325811 | 697..805 | 100 | -> | Plus |
| arm_3L | 21326254..21326364 | 806..913 | 97 | -> | Plus |
