FMO08332.5prime Sequence
940 bp (-84 high quality bases) assembled on 2010-06-02
> FMO08332.5prime
CAGTCGACATGCTAAATACCCTTTTAATTGCAATGTCTACTTCCGATGGA
GCCCCGGAAACCAAGAAACAACGTCCTGAAAGCAGCAGCAACGGCAGCAA
GGACCAAAACGGAACGGAAGCCGGCGCCGAAGGCGACTCCCGTGATAAAG
TGGCGCTGATAACAGGCATAACGGGCCAGGATGGCTCCTATTTGGCAGAG
TTTCTGCTCAAGAAGGACTACGAGGTGCACGGCATTATTCGGCGGGCCAG
CACCTTCAACACCACCCGCATTGAACATCTATATGCCGATCCAAAGGCGC
ACAAAGGTGGGCGTATGAAGCTCCATTATGGCGACATGACGGACAGCAGC
AGCCTGGTGAAGATCATCAATATGGTGAAGCCCACGGAGATTTACAATTT
GGTAGCTCAATCCCATGTCAAGGTCTCCTTCGATCTCAGTGATTACACGG
CCGAGGTGGACGCCGTGGGCACGTTGCGCATTCTGGACACCATCCGCACT
TGTGGCATGGAAAAGAACGTGAGGTTTTACCAAGCCTCCACTTCGGAGCT
ATATGGTAAAGTAGTGGAGACGCCACAGAACGAACAGACGCCCTTCTATC
CCAGGTCGCCATATGCCTGCGCTAAGATGTACGGCTTTTAGATCGTCATC
AACTACCGGGAAGCCTACAACATGTACGCCTGTAATGGAATCCTCTTCAA
CCATGAAGTCCACGACGTGTCGAGATTTTGTGACTAGAAAAATCACCCGT
ATCGTGTCCATTATTATCACAAGCAATGTAGTATTTTGAACTGCGACATC
TCGATTCAAGCGCGACTGGGGACATGCCATCGACTACATGGAGCCATGTG
GATGATGCTGCAACGGGAGTCTCCTTCCTGACTACGTCAAGCTCAGGCGA
ACGTGAAGTGTGCTCGAATTCTCGGAGCCTCTTTTATGCA
FMO08332.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:21:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gmd-RA | 1561 | CG8890-RA | 95..1015 | 9..921 | 3865 | 95.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:21:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4976220..4976659 | 615..176 | 2095 | 98.4 | Minus |
| 2L | 23513712 | 2L | 4975881..4976160 | 889..615 | 830 | 92.2 | Minus |
| 2L | 23513712 | 2L | 4976758..4976929 | 180..9 | 755 | 95.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:21:18 has no hits.
FMO08332.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:23:03 Download gff for
FMO08332.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gmd-RA | 84..989 | 1..901 | 95 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:29:12 Download gff for
FMO08332.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gmd-RA | 89..994 | 1..901 | 95 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:19:54 Download gff for
FMO08332.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gmd-RA | 89..994 | 1..901 | 95 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:19:54 Download gff for
FMO08332.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4975867..4976159 | 616..901 | 91 | <- | Minus |
| 2L | 4976220..4976655 | 180..615 | 98 | <- | Minus |
| 2L | 4976759..4976935 | 1..179 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:29:12 Download gff for
FMO08332.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4975867..4976159 | 616..901 | 91 | <- | Minus |
| arm_2L | 4976220..4976655 | 180..615 | 98 | <- | Minus |
| arm_2L | 4976759..4976935 | 1..179 | 94 | | Minus |
