FMO08333.5prime Sequence
1000 bp (978 high quality bases) assembled on 2010-06-02
> FMO08333.5prime
CAGTCGACATGAATGCCAGTGAGAACTATTTCACGATGGACCCCACAGAG
AATATATCCCAGGTCTTAGACCAGAACAGAAACAACACAAATAGCCTGCG
AACACATCCCACTGTGGAAGAGTATTATGAGAACATGACCGCCTTCCTCA
GCCTGGCCATCTTCATAGCCAGCCTGCTGACCATCCTCAACATCAGCATC
TTCGCAACGACAGTCTCTCGGCTGCGTCGTCACCTGGACAAGCCGCTGCT
GGGTCCCTCGATTATGATGGTGGGCCTGTATCCGATTATCTCGGTGGCTG
CCCTGGTTACCATTCTGGTGCCGTACTCCTGGTTCATCTGCCATACGGTG
ATGCACGTTATGTTTATGGTCGGCGGACCTGTCTTCCGCACCCTGCTCTT
TCGTTACGTGGGCTCGGAGCAGAATTACGTGAAGGAGACGGCCGGCGAGG
CGGTGCAACTAAATACTCCTCCGTGCTGTTGCTGCTGCCTCTGCCTGCCG
ATGGTGATTCCCACCAAGGCGAAACTCTGCATCTCCAGATACATGGTATG
GCAAATGCCCTTCTGGCAGGGCTCCATTATGCTGGTGATGAACATCCTAT
ACTACCGGGACATTCAGCTCTACCGGCAGGTCATGTTCTTCTTCATCCCC
TTCATCGTCTGCTCCATTGTCTTGGGCGCTTGGTCCCTCCAAATCACTGT
GCGGATGATCACGAAGGTGCGCGGGGACTATCAGCTGAGAAAGAAGATGT
TCTGCCTCCAACTGGTGGTGATGCTTTGCAAACTGCAGTACCTGGTACTC
TATGATCAGCTGGACGGCATCAAAATGGGTGGGGAGTATCCCATTAATCA
CACCGTCTACAGCAAACTATCATCACATCCTTATCCTGGTTGAAATGGTC
CTCGTTTCATGATGGTTAAAGTGCATATCGTACTCCCGTCAAGTGCAATC
GATGAAGTAACAAGGAAAAGGAGTACTCCCATTGCAGCCTTTCTAGACAT
FMO08333.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:53:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6836-RA | 1309 | CG6836-RA | 252..1222 | 9..972 | 4620 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:53:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18954254..18954671 | 133..550 | 2090 | 100 | Plus |
| 3L | 28110227 | 3L | 18954924..18955109 | 676..861 | 930 | 100 | Plus |
| 3L | 28110227 | 3L | 18954728..18954859 | 545..676 | 660 | 100 | Plus |
| 3L | 28110227 | 3L | 18953763..18953886 | 9..132 | 620 | 100 | Plus |
| 3L | 28110227 | 3L | 18955217..18955283 | 875..939 | 205 | 94 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:53:29 has no hits.
FMO08333.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:23:01 Download gff for
FMO08333.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6836-RA | 239..1236 | 1..987 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:17:36 Download gff for
FMO08333.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6836-RA | 242..1239 | 1..987 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:42:01 Download gff for
FMO08333.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6836-RA | 242..1239 | 1..987 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:42:01 Download gff for
FMO08333.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18953753..18953886 | 1..132 | 97 | -> | Plus |
| 3L | 18954254..18954666 | 133..545 | 100 | -> | Plus |
| 3L | 18954729..18954859 | 546..676 | 100 | -> | Plus |
| 3L | 18954925..18955115 | 677..866 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:17:36 Download gff for
FMO08333.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18946853..18946986 | 1..132 | 97 | -> | Plus |
| arm_3L | 18947354..18947766 | 133..545 | 100 | -> | Plus |
| arm_3L | 18947829..18947959 | 546..676 | 100 | -> | Plus |
| arm_3L | 18948025..18948215 | 677..866 | 99 | -> | Plus |
