FMO08335.5prime Sequence
1055 bp (912 high quality bases) assembled on 2010-06-02
> FMO08335.5prime
CAGTCGACATGAACTCGATGTGGTGGCCGCCAAATAAATCATTCGCCGGA
TTCGCCCACCAGGCCCTCTTCCTGCTCCTTTCCACGCTGGCCACATTCAA
TTACGTCATGGCCACTTTGACTGGTCCCGGACTGATGCCAAAACAGTGGC
ATCCCAAGGATCCCAAGGACGCCCAGTTCCTGCAGTACTGCAAAAAGTGC
GAGGGCTACAAGGCACCACGCTCCCATCATTGTCGCAAGTGTGATCGCTG
CGTCAAGAAGATGGACCATCACTGCCCATGGATCAATCACTGCGTTGGCT
GGGCCAACCACGCGTACTTCACATACTTCCTGCTCTTCTCCATCCTGGGC
AGCCTGCAGGGCACCGTGGTGCTGTGCTGCTCCTTCTGGCGGGGAATCTA
CCGCTACTACTATCTCACCCACGGATTGGCGCACTTGGCTAGCGTGCAGT
TCACTCTGCTCAGCATCATCATGTGCATTCTGGGCATGGGCCTGGCCATC
GGTGTCGTCATTGGCCTGAGCATGCTGCTGTTCATTCAGCTGAAGACGAT
TGTAAACAACCAGACGGGCATAGAGATCTGGATAGTGGAGAAGGCCATTT
ACCGCCGATATAGGAAATGCCGACTGCGACGACGAGTTCCTATATCCCTA
TGATTTGGGCTGGCGGGCAAATTTGCGACTGGTATTCAATGACGAGTGCC
AAAAGCGAGGCGATGGCATCGAGTGGCAGTGGGTGGAGGGTTGTGATCAG
TATACATTGACGCGCGAGCAACTGGCGCAAAGGAGGAGAAACGAGCTCGA
ACCCGCACTTCAAATGCACAAGGCCAGTGACTGGGCGTTGGGCTGGCGAT
CTTTCGCAGGGTTGGCGTGTTTGTGTGGCCGCTCCCTGCTCCGAAGAGCC
CGCATCAACCTGCGACACAACGACATGATTAAGGACCCTCCTTTCCCAAC
ACCGGGTTGTTGGCGAAGCGAGGTGTTTTCTAAGAAGAACTAATCTGGTC
AAAAAACGCCAACGCAGGTCCCATTCTGGTGTGGTTCCCCACAACCACCG
CCCTT
FMO08335.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:21:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5196-RB | 2023 | CG5196-RB | 537..1573 | 9..1039 | 4425 | 96.1 | Plus |
| CG5196-RA | 1679 | CG5196-RA | 193..1229 | 9..1039 | 4425 | 96.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:21:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12410460..12410980 | 241..762 | 2500 | 99 | Plus |
| 3R | 32079331 | 3R | 12409290..12409440 | 9..159 | 755 | 100 | Plus |
| 3R | 32079331 | 3R | 12411034..12411209 | 762..934 | 560 | 94.4 | Plus |
| 3R | 32079331 | 3R | 12410273..12410358 | 157..242 | 430 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:21:30 has no hits.
FMO08335.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:23:17 Download gff for
FMO08335.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5196-RB | 529..1481 | 1..950 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:29:21 Download gff for
FMO08335.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5196-RA | 185..1137 | 1..950 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:20:03 Download gff for
FMO08335.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5196-RA | 185..1137 | 1..950 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:20:03 Download gff for
FMO08335.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12409282..12409439 | 1..158 | 97 | -> | Plus |
| 3R | 12410275..12410356 | 159..240 | 100 | -> | Plus |
| 3R | 12410460..12410980 | 241..762 | 99 | -> | Plus |
| 3R | 12411035..12411226 | 763..950 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:29:21 Download gff for
FMO08335.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8235004..8235161 | 1..158 | 97 | -> | Plus |
| arm_3R | 8235997..8236078 | 159..240 | 100 | -> | Plus |
| arm_3R | 8236182..8236702 | 241..762 | 99 | -> | Plus |
| arm_3R | 8236757..8236948 | 763..950 | 92 | | Plus |
