FMO08340.5prime Sequence
1056 bp (929 high quality bases) assembled on 2010-06-02
> FMO08340.5prime
CAGTCGACATGGAGATTGACTTGGGATTTGCGGAAAAGAGCGACAATGGC
GCCTGGCTGAGCAACCGCTACTTTCCCAGCAAGCTGGGTGGCCAGCCCGC
ATGGCTGGAACTGGAGGCCTTGCCGCCCACGTCGCAGCTGCAGTGCAGCA
AGTGCAGGGCACCCAAATCCTTCCTGGCTCAGCTATACGCTCCCTTCGAA
GACGAGTACAACTTTCATCGGTCCATCTATGTGTTCCTGTGCCGGAATTC
CGACTGCCAGGAGGCCCAAAATGCAAGCAATTTCACAGTCCTCAGGTCAC
AGTTGCCGCGAAAGAATAAGTTCTTTTCGGAGGAGGAGCCGAGCGACGTG
GGTCAACCCCTGCCCGCCGTTCCCTGCCTAAAGAAACTATGCGCCGCCTG
CGGTTGCCATGCTCCCCACGCCTGCAGCAAATGCAAGGCTATCCACTACT
GCTCACCAGAGCATCAAAGGGCCCACTGGCCACAACACAAGCCAAACTGC
GGAGCACCAGAAGTAGCCACTGAGAAGCCCTTAACACAAATCGTTTTCCC
AGAATTTGAGATTGTAATGGACAGCAACCCCGTGGAGTCTGGCGAGGAGG
ACAAGGACGATGAGGCTCGCTTGGCGGAGTTCCAGGAGCTGGAGTCCAGC
GGGAAGACGGGCGACTTGAGCAATGTTTCCGAGGCGGAAATGGACAAGTA
CTTCGGAAACTCGGCGGCCGCCGATGACAAAGACCTTTCGTCAGTTCAAA
AGCAAACAGCAGCCGAACCGATCAGATCGTGCGCTACAAACGTGGAGGCC
AGCCCCCTCTGGATCACGAATACCGTCAAACGGTGGAGGACCAACTTAAC
AAGCTGCCCAATTGCATTGCTTGCGGACGAGAGCGTCAGTTCAATTTCAG
ATTATGCCCGCAGCGCTGACTCCTTCTGGAGGACAAAACTCCACTGGGGC
GTCCTGGGCATCTCAACCTGCCCAAAAGCTGCCCCCTCGACGGTACTTGA
AGATCTTCCCACCACCGGAACTTGGGTCGAGAGACCAAAGCCAGCTTTCC
TAACTG
FMO08340.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:59:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Zfrp8-RB | 1090 | CG3260-RB | 28..1016 | 9..993 | 4470 | 97.5 | Plus |
| Zfrp8-RA | 1306 | CG3260-RA | 28..1016 | 9..993 | 4470 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:59:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24134480..24135115 | 362..993 | 2505 | 96.1 | Plus |
| 2R | 25286936 | 2R | 24134016..24134284 | 9..277 | 1330 | 99.6 | Plus |
| 2R | 25286936 | 2R | 24134340..24134426 | 276..362 | 420 | 98.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:59:12 has no hits.
FMO08340.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:22:54 Download gff for
FMO08340.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Zfrp8-RA | 9..1017 | 6..1008 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:24:23 Download gff for
FMO08340.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Zfrp8-RA | 25..1033 | 6..1008 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:47:44 Download gff for
FMO08340.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Zfrp8-RA | 25..1033 | 6..1008 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:47:44 Download gff for
FMO08340.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24134013..24134284 | 6..277 | 99 | -> | Plus |
| 2R | 24134342..24134426 | 278..362 | 98 | -> | Plus |
| 2R | 24134481..24135119 | 363..996 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:24:23 Download gff for
FMO08340.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20021536..20021807 | 6..277 | 99 | -> | Plus |
| arm_2R | 20021865..20021949 | 278..362 | 98 | -> | Plus |
| arm_2R | 20022004..20022642 | 363..996 | 96 | -> | Plus |
