FMO08342.5prime Sequence
1161 bp (1022 high quality bases) assembled on 2010-06-02
> FMO08342.5prime
CAGTCGACATGTCTATTTTCAAGGCGCGAGTCAAGGAATTTGAGGATGTT
TTGGCGGGGCCACAGGATTTAATTGACCTGAAACAACTCAGGAAACTGGC
ATTTAATGGTGTGCCCGATGTGCAGAGTTTTCGAGCACTCAGTTGGAAGC
TACTCCTTGGCTATTTGGGGCCTAGGCGCAGTAGTTGGACCACAACCTTG
GCCCAAAAGCGAGCCCTGTATAAACAGTTCATCGAGGAGCTAGTCCTGCC
CCCCGGACACTCGAGCAATAGAGCTAGCGTAGACGGAGGAGATGGGGACA
AAGTCGATTCGGGGGGCGTTGGCCTGCAAGATCATCCGCTGAGCGAGGGA
CCCGAAAGCGCGTGGAACACGTTCTTCAATGATAACGAGTTTCTACTGCA
AATCGACAAGGATGTCCGCCGCTTGTGCCCGGACATATCCTTTTTCCAGC
AGCCCACCGATTATCCCTGCGAGATTGTGGTCCACAGCAAAGGAGAGCAT
GGACGAAGGCTCCACGAACGGGTGGTTCCCGCCGTTCTAAGTTCGGCGAA
TGTGGAACGCAAGGGCCTCGGCATGACAAAGATAAATTTGATTACAAAAC
GCTCCGTTGAAAACTATGCCGCCATGGAGGAGGGCCAAGAGGCTCACTGG
GAAGTTGTGCAACGCATTTTGTTCATCTATGCCAAACTAAATCCCGGCCA
GGGATATGTCCAGGGCATGAACGAAATCGTGGGACCCATTTACTATGTTA
TGGCCTCCGATCCTGACCTCACATATCGCGCCCACGCTGAGGCTGATTGT
TTCTTTTGTTTTACCGCCCTGATGAGCGAGATAAGAGACTTTTTTATTAA
AACACTAGACGACGCAGAGGCGGCATCAAGTTCATGATGGCCAGGCTATC
GAATATGCTGAAATCAAAGGACCTAAGCATTTACGAGCTACTCGGAGCCA
AGAGCTGCATCCGCAGTATTACAGCTTCAGTGGGCTCACACTGCTCCTGT
CGCAGGAGTTTCCACTGCCAGAATGTACTGCGCATTTGGGATTCCGTGGT
TGCGGACGACATGCGATTTGATTTCTGAATAAATATGCTGTCATGATATT
ATCCAAGGGAGGCATTGGAACGACCTTGCCTCGATGTGAACTCTGCACTT
TCGCATGAATT
FMO08342.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:05:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GAPsec-RA | 1544 | CG5978-RA | 127..1272 | 8..1140 | 5255 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:04:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8623077..8623550 | 581..108 | 2370 | 100 | Minus |
| 3L | 28110227 | 3L | 8622441..8622936 | 1074..580 | 2245 | 98.2 | Minus |
| 3L | 28110227 | 3L | 8623606..8623688 | 110..28 | 415 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:04:59 has no hits.
FMO08342.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:22:51 Download gff for
FMO08342.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5978-RA | 107..1225 | 1..1110 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:01:42 Download gff for
FMO08342.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GAPsec-RA | 118..1236 | 1..1110 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:37:40 Download gff for
FMO08342.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GAPsec-RA | 118..1236 | 1..1110 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:37:40 Download gff for
FMO08342.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8622456..8622934 | 582..1059 | 98 | <- | Minus |
| 3L | 8623077..8623549 | 109..581 | 100 | <- | Minus |
| 3L | 8623608..8623687 | 29..108 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:01:42 Download gff for
FMO08342.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8615556..8616034 | 582..1059 | 98 | <- | Minus |
| arm_3L | 8616177..8616649 | 109..581 | 100 | <- | Minus |
| arm_3L | 8616708..8616787 | 29..108 | 100 | <- | Minus |
