FMO08346.5prime Sequence
422 bp (422 high quality bases) assembled on 2010-06-02
> FMO08346.5prime
CAGTCGACATGACCAGCCTAACCGCAGTTTTCCAGATGGCGAGGCAGCGA
TTGATAGCCCCAGCGATAGGAAACTGGGCACGTTTTTATGCTGCAAAACC
GGCGGCGCCAGCGGGCAAGAAGAAAAAGCTTGGCAAGCTGGGTCCCATCA
TGGAGAAGAAAGTCATACCCGTGGAAACGGATGCCAACAAATTGGTGAAC
TATGTATGCGGAAGTAACTACATGAAAACAGGAGAAGATATCAAAATTAA
ACCGGATTCGGAATACCCCGACTGGCTGTGGACGCTGAATACGGAAGGCA
TCGTTCCGCTGGACGAACTGGACCCCAACTCCAAGCAGTACTGGCGCCGT
CTGAGGAAACTGGCCTTGCGGCGCAACAATCAGCTGTCCAAGCTAAAGAA
GTTCGCAAGCTTTCTAGACCAT
FMO08346.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:46:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL54-RA | 682 | CG9353-RA | 122..520 | 6..404 | 1920 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:46:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21061270..21061425 | 249..404 | 735 | 98.1 | Plus |
| 2R | 25286936 | 2R | 21061070..21061206 | 109..245 | 670 | 99.3 | Plus |
| 2R | 25286936 | 2R | 21060910..21061015 | 6..111 | 530 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:46:49 has no hits.
FMO08346.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:23:00 Download gff for
FMO08346.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL54-RA | 82..485 | 1..404 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:53:44 Download gff for
FMO08346.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL54-RA | 117..520 | 1..404 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:18:07 Download gff for
FMO08346.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL54-RA | 117..520 | 1..404 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:18:07 Download gff for
FMO08346.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21060905..21061015 | 1..111 | 97 | -> | Plus |
| 2R | 21061073..21061206 | 112..245 | 99 | -> | Plus |
| 2R | 21061267..21061425 | 246..404 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:53:44 Download gff for
FMO08346.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16948410..16948520 | 1..111 | 97 | -> | Plus |
| arm_2R | 16948578..16948711 | 112..245 | 99 | -> | Plus |
| arm_2R | 16948772..16948930 | 246..404 | 97 | | Plus |
