FMO08347.5prime Sequence
515 bp (515 high quality bases) assembled on 2010-06-02
> FMO08347.5prime
CAGTCGACATGTCGGACGGCATCGAGGTCGAGCAATTGGTGGAGAGCAAG
CCGAGAAGGATGCCGCTGGCCACGTCGCTGGAGAAGGACTCGATTCGCGA
GGCCTACGAGGATGTACGCTCCGATCTGACAGACACCGAGTGGGCGGTAT
TCAAGTTCGATGGCGCCCAGATTATTGTACATGCGCGCGGTCAGTGCTTT
GAGGAATTCCGACAGCAGTTCGGCGACTCGGAGCGCGCCTTTGGCTACAT
ACGCATCCAGATGGGTGACGAGATGTCCAAGCGCAAAAAGTTCATCTTCC
TGACGTGGATCGGGCAGGAGGTGGGCGTCATCCAGAGGGCCAAGATGTCC
ACGGACAAGGCGCTGATCAAGGATGTCCTCAACAATTTTGCCGTGGAACT
TCAGGCGGGAGTGGAGGCCGAGCTGGACATTGAGCTCTTCCGTGAAGCAC
TGAACCGTGCCGGCGGCGCCAACTACGGAACGGGCATCCGGGATAACGCA
AGCTTTCTAGACCAT
FMO08347.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:21:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6891-RA | 994 | CG6891-RA | 351..840 | 8..497 | 2450 | 100 | Plus |
| CG6891-RB | 805 | CG6891-RB | 210..651 | 56..497 | 2210 | 100 | Plus |
| CG6891-RC | 950 | CG6891-RC | 359..796 | 60..497 | 2190 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:21:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18780680..18781004 | 59..383 | 1625 | 100 | Plus |
| X | 23542271 | X | 18785786..18785927 | 242..383 | 650 | 97.2 | Plus |
| X | 23542271 | X | 18781078..18781191 | 384..497 | 570 | 100 | Plus |
| X | 23542271 | X | 18786001..18786073 | 384..456 | 365 | 100 | Plus |
| X | 23542271 | X | 18775578..18775629 | 8..59 | 260 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:21:09 has no hits.
FMO08347.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:22:59 Download gff for
FMO08347.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6891-RA | 343..848 | 1..508 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:29:07 Download gff for
FMO08347.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6891-RA | 345..850 | 1..508 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:19:48 Download gff for
FMO08347.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6891-RA | 345..850 | 1..508 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:19:48 Download gff for
FMO08347.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18775572..18775629 | 1..59 | 93 | -> | Plus |
| X | 18780681..18781004 | 60..383 | 100 | -> | Plus |
| X | 18781078..18781201 | 384..508 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:29:07 Download gff for
FMO08347.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18669605..18669662 | 1..59 | 93 | -> | Plus |
| arm_X | 18674714..18675037 | 60..383 | 100 | -> | Plus |
| arm_X | 18675111..18675234 | 384..508 | 96 | | Plus |
